| Id Trinity | TRINITY_DN52067_c0_g2_i20 |
|---|---|
| Name Transcript | Ll_transcript_474417 |
| Sequence | CTAAATTCTAATCTAAACTTACTTCCAATTTCACTTTCTCTCTTTCAATCTTCCACTCACCAAAAACCCTACATCTTCAATCGTTGCTTCCAATTCCACA CAATCCCAATTTCATTGGGGAGGAGAAAGTTTTCGGACCCATTTTGCTTCTTCGAATTCGAAATCACTGCCTGGCTTGCCGAGAAAATGGATCCTGGTCG CTACGGAATGCATCAAGGCTGGGATGATAACAACAGCGTAATTGTGGTTTCCTCCTTAAATAAATTCAAACCTATAATGGGGATGAATGAATCATTATTC AAAGAAACTTTTAGGGGTGGGGAATGGATGAATGTCATCCGTAGAAAGAAAGCTAGCTAGCTGTGGGGAAGTCAGGATATGATATGGACTGAGATTTCCC TAACCTCCTCTCATCATTGATTATTTGTTCCTGACATACCTTATTCTCTTGAATCCACAGGCTCCTGAGGGTTATGCTGCGGCCCATGAGCCAAATTTCC GGGTTGGAGGTTCTTATGATGAAAGGAGGTTTATAGATGAAAGATATCCAAGGGATGCTGGATACCGGCGAAATAGTTTCCATCGTGACATTTTGGATAG GGAGGCCTATCTGCCACCAGGACCTGCTGCTGGTCAGTGGACTCAGTCCAAACGGAGAGGTTACGATGAATATTATCCACCCGACAAGGAATCTAGACGT TTTCAGAGGCCTTATCATGAACCATATAATCAGGTTGATGCTTTCGGGGATCGTGAGATTGACACATACCCAGAACGTGATAAGTTCCAGGATGGCTATG CCAGCATTGATAACTATGGTGATCGAGGATATGATAAATCTGCCAGGTTTGCAGGGCATGACCGTGATGATTATGAGTACGATGATTATGGCTACAAATC TCGCCTTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGCCATAGTTATGATTCTGATTATGAAAGAGGTAGTAGAAGAGAT AATAATCGGAAGCAGCGTGAATCCCGTGATCGGGAACGTGATAAAAGAGATCTTAGTCGGGAAAAGGATTTGAGTCCACATAGGAGGCATGAGCGTTCTC GTTCCCGTTCTCGATCTCCATCACGGTCCCAATCCAATTCCCGTTCCCTTTCCCGTTCCCAGTCTCGTGGATATGATTATGATGATCATCCACGATCAAA ATCCCCTCGAGGTCGAAGCCATGGCCGAAGTTATCGAGAAGACAGCTATGTTGACAGTAGATATGATAGAAGTGAAAGACATAGGGATCGTGATGACAAA CATCAGCGTGAACATTATTCTGTGGCTCCGTCTGCAACTATTGTTGTTAAAGGTCTTTCACAGAAGACGACTGAAGAAGATCTATACCAAATCCTTGCGG AATGGGGTCCCCTTCGTCATGTCCGTGTTATAAAGGAGAGAAATTCTGGCATCTCTCGCGGATTTGCATTTATTGATTTTCCTTATGTGGGAGCTGCACA AGGAATGATGGAAAAACTAGGAGATGATGGTCTTATTGTGGATGGCAGAAAGCTTTTCTTTGAATACAGTAGTAAGCCAACTGGAGGTCCAGGTCAAGAT GGAGCTATAAAATCAGGTCATAATCATAAGAGCATTACATTACCATCTGATTGGATATGCACTATATGTGGCTACATCAATTTTGCACGTCGGACTTCCT GCTACCAGTGTAATGATCCACGAACAGAGGATGCTCCTGCAGCAGATATTTCATCATCAAATTCAACTGCCTTAGGAAAGAAAGGTTTGGAGGCAGGTCC GACTCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGGGATGCTCCGCTATGAGTTTTCCAAACATGCTCCTATTAAGGATCTGCGTCTT GTCAGGGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACATTTTCATTCGGTGGAGGATGCTACCAAAGCTCTTGCGGCAACAAATGGAACAA CCCTCGAGAGGAATGGACAAATTCTAAGAGTAGCATATGCAAAAAGTATCGTGGGCCCTGGATCAGGAGCTTCCCAATCGAGCAGTCTTGCAGCTGCTGC TATTGAGGCTGCAACATTTTCTCAACAGTATGATACTGTGGGATGGGCTCCAAAAGAATATAACCCAGATGACAAACAATCTGCTGGTCCAGAGCAAACT GGCACAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGGTTTTACTATGATGGGAACACTG GTCTGTATTATGATGGTAATAATGGGATTTGGTATTCATATGACAATCAAACTCAGCAGTACATCCCTTGCACTGACCAAAATCAGAATAAAACAGCTAA TAACCTCTCTGAACCATCCAAAGCATCTGATGGTTCCAGCAGTAAAAAGGTGGTGATTTCTGCGACAGCAACTACCGTTGCATCAGTTGAGAAGCCAGCT TCGTTGGCAGATGCTGTCCAGGCTGCAGCAGCAGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAATCAAAGGAGATAAAACTTGCCTCAAAAAGCA GTATTCTGGCAAACAAGAAGAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGGCAGACTACTCGAGTGGCTCTTGAAGATAATCA ACTCTCTGTTTCAGCTGATGATAAATATTCTTCAGGACATTCTGCAAAGAATAAGTTAAAAAATGAGCCTATAGCAAGGGAAAGTAATGCATCATCTACT TTGGGAATTCACACAAGTGTTACCCAGGCTGTTGCTTTCGATTCTCAGCCTCAGTCCCGGCCAGTTAGTAATAGCCTTGGGGGATCTTTGATGGGGGTTA TAAGGGGCTCGGGAAGAGGGGTTGTTAAATCAGATACTTATTCGGGTTCTTCAGCTGTCGCATCATCTATGTCAGGTTCTTTAGCAAACGTTGTTGCACA GACAACTTCAACTCCCTTTAGAACAGATGTCTCTGCCTTGAGTTCACATACACCATCTGTGGCTTCTATAAGTGGCAGAAGAAGGTTTTCAGAAATGCCC AGTTCTGCTTCAACTCACAAGGAACAATCTCAAACAACCTACAGGGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGCTCGTCGTCTTCAGTTGGGAATG ATATGTCTGACCTTGAAATTGGGGGTTCAAGTAAGTCAAAGTTTTTAATGAGTTCTGTTTCTTTTGTGTTCAACTACTATTGTACAATTGTTGAGGTAAT TGTATTTTCTTAACAGTAATTAATTGCTGATCTCTAGACATTCGCCAGTCCCCGATGAAAAGCTCTGGTGGTAGAGGAAGTTAGTTTTATATTAGGACAT AGGTGTTAACTAAGACCTTGGTGTATGAGTGAAGAATTGATATTTTGTTTATTTGTCTTTTGTATTATTGAAAGTTAAGTAAATTGCCGGGGCAAGGAAA TGAAACCTAATTAGATGTTTGTGTGTATTTCAAAATATAAATAGAACTATGATTTCTATTGACACTTTATAAATGAGTATCGGGTTTCCAGCTAGTAGAA AGGGATTTACGCCTAGTATTTACCCACCTTTCTCCTAAGACTGAAAGTTACTGTTCACAAATTTTCTTGTAGCAAAGTATAGATGCTAAGTATCAAAGAT TACTCTATTTGAAAATTCAAATAACCAAACAGTGAGTTTTGATGCCTCTAGGCCCCCTGGTAAATTTCTATCTTTGACATGTGGATTGACGTATGAAAAA ATTCTTTTACTATGTAACTTTGAAGATCGAGAATTTGCACCGAGGAAGGGGGATCCGATGCCTTTCCCTCCCGGGGTTGGTGGAGGACGTGTGGTTGGAG ATGTCAACCTTGATACTTTTGAGGTGATTACGGCTGACAAAGCAATTGATGAAAACAATGTTGGCAACCGGATGCTTCGCAACATGGGATGGCAAGAAGG CTTGGGACTTGGAAAGGATGGAAGTGGAATGGTAGAGCCAGTGAAGGCAGAAGGAATGGAGAAAAGAGCAGGACTTGGGAGTCAGCAGCAGAAGAAGTTG GATCCTAGCCTGGAGGTGCAGGCAGGGGATAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGATTTAGGGAAATGTAAGATTTTGTTATGCTCT TATTGTACAAGTGCTTTTGCTATTTTCAATTTGAAAATTTGTCAATTTGTTAATTTATGATCAAATCTGCATATCTTCTTTTGTTGTACTCTGGAGATGT TTTGGAATAATATTGTTCTTGCTCTGTCAATAGTTATCCCTTTGTTTTTTTTGGTATTAGTAAGGGTATGTCTAACCTTTTTGGATAAGGAACTAATCTC TTCCGAGTTTGTGGTCGACCCTTCCAACAAGTATCATTCCCAGGAATTGAACCTTTGATCTTGGGGATCCAAGAGTCTTACACCATTAGACGAACGTTTT GTTGTCTATGTTTCTATCCTTTTATTATTATTTTGGTGAGTGTGGCCATCAAAAGTCACATTTGGTTTTGGTTTTCTCCTGTTACATATTTCTAAAGGGA TTCTTGCTAGAAAGAGATGGCCAAAGGGTTTGACTATTGGGAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_189796; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_474417
| Blastp | SUPPRESSOR OF ABI3-5 from Arabidopsis with 56.8% of identity |
|---|---|
| Blastx | SUPPRESSOR OF ABI3-5 from Arabidopsis with 58.57% of identity |
| Eggnog | RNA binding motif protein(ENOG410YNFQ) |
| Kegg | Link to kegg annotations (AT3G54230) |
| CantataDB | Link to cantataDB annotations (CNT0001316) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423246.1) |
| Pfam | Zn-finger in Ran binding protein and others (PF00641.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |