| Id Trinity | TRINITY_DN52077_c2_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_473471 |
| Sequence | GTATTTATTTATTTTGTTGGTATACTCTAGGACCAGATTTTAATGAGTGAAAATTTGAATTATTATAAAGATTTATTAACCATTTAAGGAAGAATATAAA TATATGATATAGTTTGTGTTCCTAAATTCTGACACGAAAGGTTATTGCAGAAACCAAATCCTTGCTCTCACCTTCTCCTCCTAGATCGATTCAGGGTATT GTATTTTCATCTGGAGACCGGTGTTGGTGAATCGCGAGAAATTGACGATGTTGGCATTTTAAGCTGATTTATAAACTTTGCCCTCTTGTTCCATTGGATT TTGAACCATGTTTAAGATGGGCAAAGGGCTGCAATAATTAAAGTCAGATGAGAATCCAGGTGACTGGTGTTTGCAGAGAGGCTGAAGTTATCAATCATGG CTTTGAGATTTATAGCGATTTCGGCAATTTCTACGGTGCTAAGCTTTGTGGGTCTGCAGTTTTGCACAGACTTCTCATTATATACAGTTAAATCAGATGG AGTTATTGGCTGGAATTTAGTGCACTCGGACAATGCCAACCAATACACCGTCACCGAGTTACCTTTGGGTTTGTACACTACCATAGGGCTACTGGCAAAT TGCACAACCAATGTATTTATCTTTCTCAATCTTTGTCTTACGGCTATGTTCTTCACTGAGTTGTATTCTTCTGAGACACGTAAAATGATTGAGCGTCTCA TTTATTATGTCGTTTACAAGGGAACATTCCTACCACTGATTGTGCCACCAACTATATATCATGCTGGTCTTTGGTCAACTTGGTTGGCCGTACTTTGTTC TTTAAAGATGTTTCAAGCTTTAGCCAGAGATCGCTTAGAGCGGCTGAATGCATCTCCATCTGCTACACCCTGGACATATCTTCGTGTATATTCAGCATTG TTATTCGTTTTCTTGGTTGATGTTTTCTGGATAAGGCTATGTCTGGCAATATATAGAACACACAGGTCCTCTTTGTTTCTGTTACTATTCTTTGAGCCTC TCAGTATTGCTTTTGAGACCCTACAGGCAATTTTGGTACATGGATTTCAGCTAGTTGATATTTGGTGCAACAGCAGTGATTGCCAAAGGCCTAAACTGTT TGACAAATTAGCAGCAGGTTCACTATTGGAATGGAAGGGAACTCTTATTCGAAACTTGGGATTTTTCCTCGACATGGCAACTTTTTTTATGGCACTAGGC CATTACCTGTATATATGGCGGCTCCATGGCATGGCATTCCATCTTGTAGATGCAGTGCTATTTCTAAACATACGTGCATTACTTAGCGCAATTCTAAATC GAATAAAAGGCTTTATTAGGCTAAGGTTAGCTCTAGGAGCTCTTCATGCAGCTCTCCCCGATGCAACAACTGAAGAGCTAAGAGCATACGATGATGAATG TGCTATTTGTAGAGAACCCATGGCTAAGGCTAAAAAACTAAACTGCAATCACCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACT GATATGTATACTTGTCCTACATGTCGAAAGCCTCTTTTTGCAGGCCGACCTGAAAATGACGCAAACTCCACTACGGAGATATCAAGCGATGAGCAACTTG CACGCCAAATGAGTACAGGACTTGGTCAGGCAAACTCTGCTAATACCATCCCTGCAGGATTGCATCCCAATCAGACACCAAATTCTGTGGAAGGTGTTCC TTGGAGGGGTGCGGGACTGGATGCAGGTTGGTTGCACTCATGGCCAAATCAAGGTGTTGATGGAGCTGGTCCATCCACTGCAATCAGAACAGTTGGACTA GGAGGAGTTCAAATGGTGATGAGGCATCTTGCTTCTGTGGGAGAAACCTATGCTCAGACTGCCTTTGAAGAACCTGCTTGGAGCCTTTGGCCTATTAATC CCTCTCAGGCTTCTGCAAGTGATTCAACCATTCCTTCCCCTCGGGGAAGATTGCCAGGACGAAGTGGCAGTTTACGTATAAGGACTGCTTCACAATCTGC AAATGATGATGTGACAAATATGCTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGAGTTAATATTCCAGGTATGTCTTGGTTTT TTTATACAACATGCTTACCTCTTCTAAATAATTTCCATTTGTGTGAGTACTTTTGTCTGAGAATTTAATATTTGGAATATGTGGTGACCAATAAGTGCAG TTTTAGGTAACTTAGCACTTTTGACATTCTGTGATAGTAACATGTCATTTAGGTGCCCCCTGTCTCTTTAGAAATGCACTTATAATAGTCTGTTCTAGAC TTTCAACATTGTAATATGTTTATCTAATGTCACTTAGGTCCATGGTATTGGAAAATGACTGATGTAAAAAAGTGGTCTATTTGGGTTTTGCTAATATTGG AATTTATGATTTGTTTAGAAAAATATCCACCATGCATGTACTATCCTATCTCACTCCTATTGTCGAGTTCAATGCTAGTTTTGGCCTCTCGATTCTGGAC AGGAAGGCATCACATCCTATCTCCGTAAACTTGATCGGGCCTGGTTCCGGTGCCATTTCTTCACTCTTTCACTATTCCGTCCTTTTTCTCCCCTTTTGGG CCTATTTGTTGATTCCTACACAAAACACAACAAACCTCATGGTTAACCCGAACAAAAGGAAATAAATATAAAAACTAACGTCCTAATTAATCTACAAATT GCATGCAAAACATAAAATAAATATAAAAACTAACGTCCTAATTAATCTACAAATTGCATGCAAAACATAAAATAAATAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_189875; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_473471
| Blastp | E3 ubiquitin protein ligase RIN2 from Arabidopsis with 64.5% of identity |
|---|---|
| Blastx | E3 ubiquitin protein ligase RIN2 from Arabidopsis with 64.15% of identity |
| Eggnog | zinc ion binding(COG5243) |
| Kegg | Link to kegg annotations (AT4G25230) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019427189.1) |
| Pfam | Ring finger domain (PF13639.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |