Ll_transcript_473478

• Id Trinity: TRINITY_DN52077_c2_g1_i18
• Name Transcript: Ll_transcript_473478
• Sequence: AAACGACCCCACTTTGGTGAAAATGCCCATAGAATTACACAAAGTAAAATATAAATAAAATATGATAAGTTCTATTTTCCTAAATTCCTATCCAGTCTTT TCCTGATTCTGATGCGGAAGGTTATTGCAGAAGCCCCAACCCTTTCTCCCACCTCCTCCTAAATCGAACCAGGATATCCTATTTTCATCCGAGACCGGTG ATGATAAATTGGTGACAAAATGATGTTGGCGTTTTAAGCTGATTATTAAACTTTGCCCTCTTAGTTCCATTGGATTTTGAACCATATTTAAGATGGGCAA AGGGCTGCTGCAATAATTAAAGTCAGATGAAAATCCAAGAGACCGGTGTTGGCAGAGAGGCTGAAGTTATTAGTAATGGCTTTGAGGTTTATAACGATTT CGGCAATTTCAACGGTGCTAAGTTTTGTGGGTCTGCAGTTTTGCGCAAACTTCTCTTTAGATACACTTAAATCAGATGGTCTACTTGGCTGGGATGTAAT GCAATTGGACAATGCCAACCATGACACAAACTTACCTTTGGGTTTGTTTACTACTGTAGGGCTACTTGCGAATTGCACGATCAATCTATTTATCCTTCTT AATCTTTGTCTGAAGGCTATGTTCTTCACAGAGTTGTATTCTTCTGAAACTCGTAAATTAATTGAGCGTCTCATTAATTATGTTGTTTACAAGGGGATGT TCCTACCACTTATTGTGCCACCAACTATATATCAGGCTGGTCTTTGGTCAATTTGGTTGGCTGTGCTCTGCTCTTTAAAGGTATATGTTACTAAAAGAGA ACATATGAAAATAATTTTGTTGATGTTGGATATATACAAAACCAATGTCAATTAACTGTCTGTCATGCATGTTTTACATATTGCTTAGATGTTTCAAGCT TTAGCCAGAGATCGTTTGGAACGGCTGAATGCATCTCCATCTGCTACGCCCTGGACATATCTTCGTGTATATTCAGCGTTGTTATTTGTTTTCTTGGTTG ATGTTCTCTGGTACTGCTTACTCTTTTCTAATGCAACATTCATATTATTCTATTACCATCCCAGTTGTTGTTATTACAATACTGGAGATTCCATCTGTAT CTTGTTTTTTATGTGGTTTTGTTAGGAATTGTTGGTCAATTTTAGCCATATATTCCATTTAACTGATATGTAAATTAAAAAATAATTTGATTGCTGAAAC AATCACTAGTAATGTTGTTGCTTAAGAATGCTTTTGACACTCCCTTTTTTATGCTCCCAGGATAAGGCTATGTCTAGCGATATATAGAACACATGGGTCC TCTTTGTTTCTGTTACTATTCTTTGAGCCTTTCTGTATTGCTTTTGAGACCTTACAGGCCATTTTGGTACACGGATTTCAGTTAGTTGATATATGGTGCA ACAGCAGTGATTACAGAAGGCCTAAACTGTTTGACTCAATAACAGCAGGTTCATTATTGGAATGTAAAGGAATTCTTATTCGGAACTTGGGATTTTTCCT AGACATGGCAACATTTTTTATGGCACTAGGCCATTACATGTATATATGGCGGCTTCATGGTGTGGCATTCCATCTTGTAGATGCAGTGCTATTTCTAAAC ACACGTGCATTACTTAGTGCAATTGTAAATCGCAT
• Tissue: pods
• Gene name: LI_gene_189875;
• Additional information: details;

Expression of Ll_transcript_473478

FPKM

• PAB: 0.7
• PNAB: 1.2
• PS1: 0.1
• PS2: 0.5
• PS3: 0.9
• PW1: 0
• PW2: 0.3
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_473478

• Blastp: E3 ubiquitin protein ligase RIN2 from Arabidopsis with 49.64% of identity
• Blastx: E3 ubiquitin protein ligase RIN2 from Arabidopsis with 42.41% of identity
• Eggnog: zinc ion binding(COG5243)
• Kegg: Link to kegg annotations (AT4G25230)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419130.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;