Ll_transcript_473479

• Id Trinity: TRINITY_DN52077_c2_g1_i19
• Name Transcript: Ll_transcript_473479
• Sequence: AGATAATCTCTCTCACTATATTCTCTCTCCTGTCTTTTTCCTGATTCTGTTGCGAAAGGTTATTGCACAAACCCTTCTTCCCACCTTCTTCTAGATCCAT TCAGGGTATCCTATTTTCCTCTGGAATCTGGTGATGGTGAAACGGTGACAAAGTGATTTATAAACTTTGCCCTCTTGTTCCATTGGATTTTGAACCGTTA TTTAAGATGGGCAAAGGGCTGCAGTAGTGAAAGTCAGATGAGAATCCTGGAAATTGGTGTTGGCAGAGAGGCTGAAGTTATTAATAATGGCTTTGAGGTT TATAGCGATTTCGGCAATTTCAACAGTGCTAAGCTTTGCCGGTCTGTGGCTTTGCTCAGACTTCTCGTTACATACACTTAAATCAGATGGACTAATTCGC TTGAATTTACTGCACTTGGACAATGCCAACAATGACATTGAGTTACCTTTGGGTTTGTTCACTACCATAGGGCTACTGGTTAATTGCACGATCAATGTAT TTATCCTTCTCAATCTGTGTCTTAAGGTTATGTTCTTCACGGAGTTGTATTCTTCTGAAAGTCATAAACTGATCGAGCGTCTCATTAATTATGTCGTTTA TAAGGGGACATTCCTACCACTGATTGTGCCACCAACTATATATCATGCTGGTCTTTGGTCAACTTGGTTGGCCGTACTTTGTTCTTTAAAGATGTTTCAA GCTTTAGCCAGAGATCGTTTAGAGCGGCTGAATGCATCTCCATCTGCCACTCCCTGGACATATTTCCGCGTATATTCAGCATTGATATTCGTTTTATTGG TTGATGTTCTCTGGATAAGGCTATGTCTGGCGATATATAGAACGCATGGGTCCTCTTTGTTTCTGTTACTATTCTTTGAGCCTTTCAGTATTGCTTTTGA AACCCTACAGGCCATTTTGGTGCATGGGTTTCAGTTATTTGATATATGGTGCAACAGCAATGATTGTGGAAGGTCTAAACTGTTTGACTCATTAACAGCA GGTTCACTATTGGAATGGAAGGGTCTTCTAATTCGGAACTTCGGATTTTTCCTAGACATGGCGACATTTTTTATGGCACTAGGCCATTACCTGTATATAT GGCGGCTCCATGGCATGGCATTCCATCTTGTAGATGCAGTGCTATTTCTAAACATACGTGCATTACTTAGCGCAATTCTAAATCGAATAAAAGGCTTTAT TAGGCTAAGGTTAGCTCTAGGAGCTCTTCATGCAGCTCTCCCCGATGCAACAACTGAAGAGCTAAGAGCATACGATGATGAATGTGCTATTTGTAGAGAA CCCATGGCTAAGGCTAAAAAACTAAACTGCAATCACCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGCCTGACTGATATGTATACTTGTC CTACATGTCGAAAGCCTCTTTTTGCAGGCCGACCTGAAAATGACGCAAACTCCACTACGGAGATATCAAGCGATGAGCAACTTGCACGCCAAATGAGTAC AGGACTTGGTCAGGCAAACTCTGCTAATACCATCCCTGCAGGATTGCATCCCAATCAGACACCAAATTCTGTGGAAGGTGTTCCTTGGAGGGGTGCGGGA CTGGATGCAGGTTGGTTGCACTCATGGCCAAATCAAGGTGTTGATGGAGCTGGTCCATCCACTGCAATCAGAACAGTTGGACTAGGAGGAGTTCAAATGG TGATGAGGCATCTTGCTTCTGTGGGAGAAACCTATGCTCAGACTGCCTTTGAAGAACCTGCTTGGAGCCTTTGGCCTATTAATCCCTCTCAGGCTTCTGC AAGTGATTCAACCATTCCTTCCCCTCGGGGAAGATTGCCAGGACGAAGTGGCAGTTTACGTATAAGGACTGCTTCACAATCTGCAAATGATGATGTGACA AATATGCTTGCCATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGAGTTAATATTCCAGGTATGTCTTGGTTTTTTTATACAACATGCTT ACCTCTTCTAAATAATTTCCATTTGTGTGAGTACTTTTGTCTGAGAATTTAATATTTGGAATATGTGGTGACCAATAAGTGCAGTTTTAGGTAACTTAGC ACTTTTGACATTCTGTGATAGTAACATGTCATTTAGGTGCCCCCTGTCTCTTTAGAAATGCACTTATAATAGTCTGTTCTAGACTTTCAACATTGTAATA TGTTTATCTAATGTCACTTAGGTCCATGGTATTGGAAAATGACTGATGTAAAAAAGTGGTCTATTTGGGTTTTGCTAATATTGGAATTTATGATTTGTTT AGAAAAATATCCACCATGCATGTACTATCCTATCTCACTCCTATTGTCGAGTTCAATGCTAGTTTTGGCCTCTCGATTCTGGACAGGAAGGCATCACATC CTATCTCCGTAAACTTGATCGGGCCTGGTTCCGGTGCCATTTCTTCACTCTTTCACTATTCCGTCCTTTTTCTCCCCTTTTGGGCCTATTTGTTGATTCC TACACAAAACACAACAAACCTCATGGTTAACCCGAACAAAAGGAAATAAATATAAAAACTAACGTCCTAATTAATCTACAAATTGCATGCAAAACATAAA ATAAATATGCTACAAATACAAATAAACATATATTGTCGATCCTTAAACTATCTCGAAGTCAAAATTAGCCTCTGAATTCTGTCAACTTAATAATGGCGCA CGTTGTATCTCAATGTGGAGATCGATTTCCATCAAGACATTGATAGAGTTTGGATAGAAGGGCATTGATTCAAAGATTAAAAAACTTCTAAGGATTTATT ATCCAGATTATGGTTGATGGGTATTAGTTGCAATCAGCAATACTTGATGGGCTTTTATTCTTTATTTTGGACCAATTTTTTTTGCAGATTGCTTGAATAA GTATTTCATTCTAAAGCATTTCATAATGCAGGACTTGCAGAGGACAAATTC
• Tissue: pods
• Gene name: LI_gene_189875;
• Additional information: details;

Expression of Ll_transcript_473479

FPKM

• PAB: 0.4
• PNAB: 0.3
• PS1: 0
• PS2: 0.8
• PS3: 0.6
• PW1: 0.5
• PW2: 0.2
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_473479

• Blastp: E3 ubiquitin protein ligase RIN2 from Arabidopsis with 65.43% of identity
• Blastx: E3 ubiquitin protein ligase RIN2 from Arabidopsis with 64.9% of identity
• Eggnog: zinc ion binding(COG5243)
• Kegg: Link to kegg annotations (AT4G25230)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419130.1)
• Pfam: Ring finger domain (PF13639.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;