Ll_transcript_474585

• Id Trinity: TRINITY_DN52082_c0_g2_i14
• Name Transcript: Ll_transcript_474585
• Sequence: GCATTATCTGCAGGATATGGACCGCAGTTGAAGAAAGGAAGTCTTACATGGTCGTCTGCAAATGATAAAGATGAGGTTTTGATTTCTTTATTTTGCTTTA TTATTTTCAGCTTCAGCTATAAAGATTGTGTTACACGAAAACCTCCATATTTTAGTAATTTTAAGAAAATGAAATACAATTAAGATATAATTTCAGATTG CTGATTTCTTGCTAGATATTAAGTTCAATTGAACCTTTGAATGCCTTCTGTCACTGTTGAATGTTTTGCTGAATTTTTTTGTTTTGCATGCATTTTAATC AATGGTCGAATAGTTTTCTTAATTTCTTTTTGCTATTCTTTGGTTGGGAGTAGCAGTAGAATTTACAATAATTCCTTAGTCTAAGTGCGAGGATGGCTAT TTTGGCCACCCTTTGGTGGTGCTCTGCACATGGGCTTTTTAGTGGTGTTTCTTTGGTAGACACGGGATTGACATGCTTTGTTGCATAACCCTTTTGATTA GTTTTAGGTGTTTCTTTTTGTTTTCAAAGACAGTTTATCTTAATTTCATTGTATTTATTGAGTGGATCAAAATGTAAATCTAGTCGCAGGGCAAAAATAT TGAAGATATCATTTCCACACTTCGTAATGGTTCAGCAGCAGAAAATGCAGTAGCAAAAATGCGGCATAGAGGTCTTTTAGCACCTCGAAAATCTAGGCAT CGGCTAACTCCTGGAACAGTCAAGTTTGCTGCATTTCATGTTCTCTCACTTGAGGGTAGTAAGGGACTTAATGTGCTGGAGCTTGCAGAAAAAATCCAGA AATCTGGTCTTCGAGACCTGACGACTAGCAAGACACCTGAGGCATCAATTTCTGTTGCCTTGACAAGAGATACTAAGCTTTTTGAAAGAGTAGCTCCATC AACATATCGCGTGCGTTCTGCTTTTAGAAAGGATCCTGTTCATGCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTT GTCGTTGGTGAAGGTGCTGATGATGTTGAAAGAGAAGAAGATTCAGAAAGCGATGAAGTTGATGAGGACCCTGAAGTTGATGATTTGGTAAATCCTGCAA GCACTAAAAGCACAACTGAACAGAGTGTTGATTTCTCATCAAATGGAAATGAAAATTTGGACCACAATGTAGAACTTATTCAAGATGAGTTTCATAAGGA CCTGCCTTGTTTTCCAGAGAGTTTTTCCAGGAATGCTGATTGTCCAGTTGTTGTTGTGGGACAACCTGCTGCTTCCGAGGATCCGAATGCTGGAAATGTT GAAGAGAATACGGAAATTGATGAAAGTAAGTGTGGAGAGTCATGGGTTCAAGGTCTCTCAGAAGGTGAATATTCTGATCTCTGTGTCGAGGAGCGTCTAA ATGCTCTTGTTGTATTGGTTGGTATGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTTTGAAGAAGCAAAT GTGGGCAGAAGCTCAGATAGATAAAGTTCGCCCGAAAGATGATTATCTTAGTAAATCAAATTTTCCATCAATCAGTGGGAATACAGTTGAAACTCAATTA ACATGTCCTGCTGTGGAGGGCAACCAAAGCCCATTGCTTGACATTAATATTGACAATAATAATAATGAGGCATTGTCCTTCACTCCAGAAAATCAAAAGG TGACTACTGCTGCACAGAGCTTGTCTTTTCAGCCCTGGTTAATTCAAGATCCTTGCACAAGTCAAGATAACCCTCAGGCTCAGCTATCTTTGCAATATTC GAAAAGGTCACGTTCTCAATTGAAATCTTATATTTCCCACATAGCAGAAGAGATGTATGTCTATAGGTCCTTACCTCTGGGCCAAGATCGCAGACGTAAT CGGTATTGGCAGTTTGTTGCATGTGCTTCTTGCAATGATCCTGGTGCTGGCAGGATCTTTGTTGAATATCTTAATGGCAAATGGAGGCTTATTGATTCTG AAGAGGCCTTTGATGCTCTTTTGAATTCATTGGATTCACGTGGGATCAGGGAGTCTCATTTGCGCATAATGTTGCAAAAGATTGAGAACTCCTTCAAAGA AAGTGTTCGAAAGAATACACATGTTAAAGTTGGAAGCATGTGTGAAACTAGTATTAAAAATGAAGCTGATGAAACAGATTCAAGTCCTGATCGTGATACT GGGTTTGACAGTCCTAGCAGTATTATTTGTGGCTTGAACACTGATACTTCAGTAACTTCTTTGTCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGAGA AGAAAGCTGCCTTGAGAAGGTATCAAGATTTCCAAAAATGGATGTGGAGAGAATGCTATAACTCATCAATATTGAGTGTAATGAAAAGTGGTAAACAGAG ATGCAAACCTCAGGTGGGCATCTGTGATACCTGTCTCAACCCTTATTTCTTTGAAGATTCCCATTGCAATTGTTGCCACCAACCTATTCCCTCACATAAT GGATTTAATTTTGCTAAGCATTCATTTCAATGTGGAGACCAGTTGTCCAAAGATATTTGTATTTTGGATTCTTCTCTTCCCTTGCAGACAAGATTGCTGA AGGCCCTGCTGGCTAATATTGAGGCATGTGTTCCGCCTGAGGCACTTAATTCACTTTGGACAGAAGATATTAGGAGGCGTTGGGGTTTGAAGTTGAGCAA ATCAAATTCTGTTGAGGAACTTTTACAGATATTGTCTCTATTTGAGAGAGCACTACAACGGGATTTTCTATCGTCAAACTTCTCTACAACTGATGAATTG TTGGGATTGAGCAGTATGTCAGTAAGTACTGCACTTGCTTCTACTGATCCAGAGTTTGTTGCTGTACTTCCGTGGGTTCCACAAACTACTGCAGCAGTGT CTCTCAGGCTTTTTGAGATTGATTCGTCCATCAGTTATGTAAAACCTGAGCCTCCTAAGGAGAAAGAAGCAGGAGAATACATAAAGCTCCCTTCGAGATA TACTCCCTTCAAATTCAAGCAGGAAGTTGAACCGGCAGGATTAGACCATAATGAATTCATTCAGGATAAATCTGCTCCTAAGAAAGTTGTGCGAAGTGGC AATAAACGTGGACGAGGGTCTAAGGACCAAGGACGGGGTAAAAAGCTGTCTAAAAGACCATACAATTCCAAACGAGATATTGGCCGCCGTGATGTTACGG TCGCTGAGAATCTAAGCCTCAAATTAAAACAACAGCAGGGACAAGGAACACAAGGACAGGCAGGTGGACGAGGGCGCCGAACGGTCAGGAAACGGAGGGT GGAAAAGAGAGCTGTTGAAGATTTGTTGCTTGGCAATACCGCAGCTGGTCATAGCAACAAGATCAGTAGAGTACCAATGAGAAGCATGGATGTAGGTTGG GAAGTTAACAAGGCAAGTCCTATAACTCATGTCCACATGGATGTTGCTGATAACAGTAATAGTACTGAAGAGGTGGAATCTGATGATAATGCCGCAGCAG TAGAGTATGATAAAGGAAACTGGGAGATAGGTTTTAGTGGTGTTGCCCCCCACAACAGATGGAGTAATGATTTGGTTGGAATGAGTGATGAAGATGTGGA TGCTTCTGAAGATGACAATGACAATAGCCTTGATGAGCAAGAAGAGGAGTATTCAGAAGTAGATGTTATGAGTGAGGGTTCAGATGGCATTGCAAACAGA GCTGTAGTAAATGAAGACTCAGACTCAGCTGTCTCTGAAGATTCTTCTGATTAGAGCATCTTTTTTAATTGATCAATGAAGGGGTTTGCATCTCAAGTAT GCATTACATTTTTGATATTTCAGCTTTACAAGTACCTAATCCCCAAGTCATGCCATGGCTTAAAGAGTTTATGGTTCAGTAGATTCATATGTTAATAGTG TATACTATCCTTATCCATGCAAAATGGAGCCTTAGTTTTAAGCATGTTAAGCATAGGGCCTGTGTAATAGGTACTCATTAAGTAATAATAATTTATCATT TCTTGATTAGCTTTTCATTGCTTGCACTCTGAAATATGAAGGAATAATTAGTATGATGACTAATGGAGAATGTTGGCTAACCAAAAATAGAAAGTTATTG TAAAATGATGTGTTTAACATATAGAGAATTTTGGATTTGATTTTTCAGTGCTGACTTTCTCTTTTTGTATTCTTTAACTAGTGGCCTTGGGAC
• Tissue: pods
• Gene name: LI_gene_189906;
• Additional information: details;

Expression of Ll_transcript_474585

FPKM

• PAB: 0.1
• PNAB: 0.4
• PS1: 0.3
• PS2: 0.4
• PS3: 0.8
• PW1: 0.4
• PW2: 0.4
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_474585

• Blastp: Homeobox-DDT domain protein RLT1 from Arabidopsis with 47.14% of identity
• Blastx: Homeobox-DDT domain protein RLT1 from Arabidopsis with 46.95% of identity
• Eggnog: DDT domain(ENOG4111F53)
• Kegg: Link to kegg annotations (AT1G28420)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019423521.1)
• Pfam: HB1, ASXL, restriction endonuclease HTH domain (PF05066.12)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;