Ll_transcript_474572

• Id Trinity: TRINITY_DN52082_c0_g2_i5
• Name Transcript: Ll_transcript_474572
• Sequence: ATCCGAAATTGGCATAAGCACTTAAACCAGTTGACATGGCCAGAAGTGTTCCGACAGCTGGCATTATCTGCAGGATATGGACCGCAGTTGAAGAAAGGAA GTCTTACATGGTCGTCTGCAAATGATAAAGATGAGTCGCAGGGCAAAAATATTGAAGATATCATTTCCACACTTCGTAATGGTTCAGCAGCAGAAAATGC AGTAGCAAAAATGCGGCATAGAGGTCTTTTAGCACCTCGAAAATCTAGGCATCGGCTAACTCCTGGAACAGTCAAGTTTGCTGCATTTCATGTTCTCTCA CTTGAGGGTAGTAAGGGACTTAATGTGCTGGAGCTTGCAGAAAAAATCCAGAAATCTGGTCTTCGAGACCTGACGACTAGCAAGACACCTGAGGCATCAA TTTCTGTTGCCTTGACAAGAGATACTAAGCTTTTTGAAAGAGTAGCTCCATCAACATATCGCGTGCGTTCTGCTTTTAGAAAGGATCCTGTTCATGCTGA GTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTGTCGTTGGTGAAGGTGCTGATGATGTTGAAAGAGAAGAAGATTCAGAA AGCGATGAAGTTGATGAGGACCCTGAAGTTGATGATTTGGTAAATCCTGCAAGCACTAAAAGCACAACTGAACAGAGTGTTGATTTCTCATCAAATGGAA ATGAAAATTTGGACCACAATGTAGAACTTATTCAAGATGAGTTTCATAAGGACCTGCCTTGTTTTCCAGAGAGTTTTTCCAGGAATGCTGATTGTCCAGT TGTTGTTGTGGGACAACCTGCTGCTTCCGAGGATCCGAATGCTGGAAATGTTGAAGAGAATACGGAAATTGATGAAAGTAAGTGTGGAGAGTCATGGGTT CAAGGTCTCTCAGAAGGTGAATATTCTGATCTCTGTGTCGAGGAGCGTCTAAATGCTCTTGTTGTATTGGTTGGTATGGCAAATGAAGGAAATTCAATCC GTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTTTGAAGAAGCAAATGTGGGCAGAAGCTCAGATAGATAAAGTTCGCCCGAAAGATGATTATCT TAGTAAATCAAATTTTCCATCAATCAGTGGGAATACAGTTGAAACTCAATTAACATGTCCTGCTGTGGAGGGCAACCAAAGCCCATTGCTTGACATTAAT ATTGACAATAATAATAATGAGGCATTGTCCTTCACTCCAGAAAATCAAAAGGTGACTACTGCTGCACAGAGCTTGTCTTTTCAGCCCTGGTTAATTCAAG ATCCTTGCACAAGTCAAGATAACCCTCAGGCTCAGCTATCTTTGCAATATTCGAAAAGGTCACGTTCTCAATTGAAATCTTATATTTCCCACATAGCAGA AGAGATGTATGTCTATAGGTCCTTACCTCTGGGCCAAGATCGCAGACGTAATCGGTATTGGCAGTTTGTTGCATGTGCTTCTTGCAATGATCCTGGTGCT GGCAGGATCTTTGTTGAATATCTTAATGGCAAATGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCTCTTTTGAATTCATTGGATTCACGTGGGATCA GGGAGTCTCATTTGCGCATAATGTTGCAAAAGATTGAGAACTCCTTCAAAGAAAGTGTTCGAAAGAATACACATGTTAAAGTTGGAAGCATGTGTGAAAC TAGTATTAAAAATGAAGCTGATGAAACAGATTCAAGTCCTGATCGTGATACTGGGTTTGACAGTCCTAGCAGTATTATTTGTGGCTTGAACACTGATACT TCAGTAACTTCTTTGTCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGAGAAGAAAGCTGCCTTGAGAAGGTATCAAGATTTCCAAAAATGGATGTGGA GAGAATGCTATAACTCATCAATATTGAGTGTAATGAAAAGTGGTAAACAGAGATGCAAACCTCAGGTGGGCATCTGTGATACCTGTCTCAACCCTTATTT CTTTGAAGATTCCCATTGCAATTGTTGCCACCAACCTATTCCCTCACATAATGGATTTAATTTTGCTAAGCATTCATTTCAATGTGGAGACCAGTTGTCC AAAGATATTTGTATTTTGGATTCTTCTCTTCCCTTGCAGACAAGATTGCTGAAGGCCCTGCTGGCTAATATTGAGGCATGTGTTCCGCCTGAGGCACTTA ATTCACTTTGGACAGAAGATATTAGGAGGCGTTGGGGTTTGAAGTTGAGCAAATCAAATTCTGTTGAGGAACTTTTACAGATATTGTCTCTATTTGAGAG AGCACTACAACGGGATTTTCTATCGTCAAACTTCTCTACAACTGATGAATTGTTGGGATTGAGCAGTATGTCAGTAAGTACTGCACTTGCTTCTACTGAT CCAGAGTTTGTTGCTGTACTTCCGTGGGTTCCACAAACTACTGCAGCAGTGTCTCTCAGGCTTTTTGAGATTGATTCGTCCATCAGTTATGTAAAACCTG AGCCTCCTAAGGAGAAAGAAGCAGGAGAATACATAAAGCTCCCTTCGAGATATACTCCCTTCAAATTCAAGCAGGAAGTTGAACCGGCAGGATTAGACCA TAATGAATTCATTCAGGATAAATCTGCTCCTAAGAAAGTTGTGCGAAGTGGCAATAAACGTGGACGAGGGTCTAAGGACCAAGGACGGGGTAAAAAGCTG TCTAAAAGACCATACAATTCCAAACGAGATATTGGCCGCCGTGATGTTACGGTCGCTGAGAATCTAAGCCTCAAATTAAAACAACAGCAGGGACAAGGAA CACAAGGACAGGCAGGTGGACGAGGGCGCCGAACGGTCAGGAAACGGAGGGTGGAAAAGAGAGCTGTTGAAGATTTGTTGCTTGGCAATACCGCAGCTGG TCATAGCAACAAGATCAGTAGAGTACCAATGAGAAGCATGGATGTAGGTTGGGAAGTTAACAAGGCAAGTCCTATAACTCATGTCCACATGGATGTTGCT GATAACAGTAATAGTACTGAAGAGGTGGAATCTGATGATAATGCCGCAGCAGTAGAGTATGATAAAGGAAACTGGGAGATAGGTTTTAGTGGTGTTGCCC CCCACAACAGATGGAGTAATGATTTGGTTGGAATGAGTGATGAAGATGTGGATGCTTCTGAAGATGACAATGACAATAGCCTTGATGAGCAAGAAGAGGA GTATTCAGAAGTAGATGTTATGAGTGAGGGTTCAGATGGCATTGCAAACAGAGCTGTAGTAAATGAAGACTCAGACTCAGCTGTCTCTGAAGATTCTTCT GATTAGAGCATCTTTTTTAATTGATCAATGAAGGGGTTTGCATCTCAAGTATGCATTACATTTTTGATATTTCAGCTTTACAAGTACCTAATCCCCAAGT CATGCCATGGCTTAAAGAGTTTATGGTTCAGTAGATTCATATGTTAATAGTGTATACTATCCTTATCCATGCAAAATGGAGCCTTAGTTTTAAGCATGTT AAGCATAGGGCCTGTGTAATAGGTACTCATTAAGTAATAATAATTTATCATTTCTTGATTAGCTTTTCATTGCTTGCACTCTGAAATATGAAGGAATAAT TAGTATGATGACTAATGGAGAATGTTGGCTAACCAAAAATAGAAAGTTATTGTAAAATGATGTGTTTAACATATAGAGAATTTTGGATTTGATTTTTCAG TGCTGACTTTCTCTTTTTGTATTCTTTAACTAGTGGCCTTGGGAC
• Tissue: pods
• Gene name: LI_gene_189906;
• Additional information: details;

Expression of Ll_transcript_474572

FPKM

• PAB: 3.3
• PNAB: 10.2
• PS1: 12
• PS2: 10.2
• PS3: 14.8
• PW1: 8.9
• PW2: 10.3
• PW3: 9.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_474572

• Blastp: Homeobox-DDT domain protein RLT1 from Arabidopsis with 47.14% of identity
• Blastx: Homeobox-DDT domain protein RLT1 from Arabidopsis with 47.75% of identity
• Eggnog: DDT domain(ENOG4111F53)
• Kegg: Link to kegg annotations (AT1G28420)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019423521.1)
• Pfam: HB1, ASXL, restriction endonuclease HTH domain (PF05066.12)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;