Ll_transcript_474574

• Id Trinity: TRINITY_DN52082_c0_g2_i7
• Name Transcript: Ll_transcript_474574
• Sequence: GCTAATTCTGGAGGTGGCCATCTAGAAATTGTTGAAGGGGCATATTCATGGGGCTTTGATATACGAAATTGGCATAAGCACTTAAATCGGTTGACATGGC CAGAAATTTTCCGACAGCTGGCATTATCTGCAGGATATGGACCACAGTTGAAGAAAGGAAGTATTACATGGCCATGTTCAAATGATAAAGATGAGGGAAG AAATATTGAAGAGATCATTTCCACACTCCGTAATGGTTCTGCAGCAGAGAAGGCAGTAGCAAAAATGCGGCATAGAGGTCTATTGGCACCTCTAAAATCT AGGCACCGGTTAACTCCTGGAACAGTCAAGTTTGCTGCATTTCATGCTCTCTCGATTGAGGGTAGCAAGGGACTTAATGTGCTAGAGCTTGCAGAAAAAA TTCAGAAATTTGGTCTTCGGGACCTGACTACTAGCAAGACACCTGAGGCGTCAATTTCTGTTGCTTTGTCGAGAGACACTAAACTTTTTGAAAGAATAGC TCCATCAACATATCGTGTACGTTCTGCATTTGTGAAGGATCCTATTGATGCCGAGTCCATTATGATAGAAGCAAGAAAGAAAATTCAAATATTTGAAAAT GGGTTTATTGCCGGCGAAGGTGCTGATGATGTTGAAAGAGAAGAAGATTCTGAAAGTGACGAAGCTGATGAGAACCCTGAAGTTGATGATTTGGTAAATC CTTCAAGTTCTAAGAGAACTTCTGAACTGCTTGATGATTTCTCATCAAATGGAATTGGAAATTTGGGTGACAATGTAGAACTCATTCAAGATGAGTTTGA TAAGGATCCGCTTTGTTTTCCAGACAATGTTTCCAAGAGTGCTGATTGTCCAATTGCTGTTGTGGGACTACCTGCTGCTTTTGTAGATCGGAATGCTGGA AATATTGATGAAGATAACTTCGAAATTGATGAAAGCAAGCGTGGAGCATCATGGGTTCAAGGGCTTACAGAAGGAGAATATTCTGATCTCAGTGTTGAGG AGCGTCTAAATGCTCTTGTTGTTCTGGTTGGTATGGCAAATGAAGGGAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTTTGAA GAAGCAAATGTGGGCAGAAGCTCAGATAGATAAAGTTCGTTCAAAAGATGATTATATTAGTAAATCAGATTTTCCATCCACCAATGGGAATAAAGTTGAA ACTCAATACACATGTCCTGTTGTGGAGAGCAACCAAAGCCCATTGTTTGACATTAATATTGATAATAATAATGAGGCATCACCCCTCACTGCAGAAAATC AAAAGACACCTGCCGCACAGAGCCTGTCTTTTCAACCCTGGTTAGTTCATGATCCTTGCACAAGTCAAGCTAACCGTCAGGCTCAGCTATCTGCGCAATA TTCGAAAAGGTCATGTTCTCAGTTGAAATCTTATATTTCCCACATAGCAGAGGAGATGCATGTCTACAGGTCCTTACCTCTGGGCCAAGATCGCAGACGT AATCGGTATTGGCAGTTTGTTGCATGTGCTTCTTGCAATGATCCTGGTGCTGGCAGGATCTTTGTTGAATATCTTGATAGCAAATGGATGCTTATTGATT CCGAAGAGGCCTTTGATGCTCTTTTGAATTCATTGGATTTACGCGGGATCAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGATTGAGAACTCCTTCAA AGAAAATGTTCGAAAGAATGCACGTGTTGAAGTTGGAAGCATATGTGAAACTTCTATTAAAAATGAAGCTGATGAAACAGGTTCAAGTCCTGATCGTCAT GCTGGATCTGACAGTCCTAGCAGTACCCTTTGTGGCTTGAACTCTGATACGTCAGAAACTTCATCATCCTTCAAAATTGAGCTTGGGGAAAGTGAGAGCG AGAAAAAAGCTGCCTTGAAAAGGTATCAAGATTTTCAAAAATGGATGTGGAGAGAATGCTATAAATCATCAATGTTATGTGCAGTGAAAAGTGGTAAAAG AAGATGCAAACGTCAGGTGGACATCTGTGATACCTGTCTAAACCCTTATTTCTTTGAAGACTCCCATTGCGATTGTTGTCACCAGTCTTTTCCATCAAAT AATGGATTTAACTTTTCTAAGCATGCTTTTCAATGTGGAGACAAGTTGTTCAAAGATATTTGTGTTTTGGATTCTGGTCTTCCCTTGCGGATAAGATTGC TGAAGGCCCTGGTGGCTTTTATTGAGGCATCTGTTCCGCCTGAGGCACTTAAATCAATTTGGACAGAAGATATTAGGAGGGATTGGGGATTGAAGTTGAT CAAATCATCTTCTGTTGAGGAACTTTTAAAGTTACTGACCCTATTCGAGAGAGCATTACAACGAGATTTCTTATCATCGAACTTCTCTACAACAGAGGAG TTGTTGGGATCAAGCAGCCTGTCCCAGAGTGCTGCACATGCTTCAGATCCTGAACCAGTTGCTTTACTTCCATGGATTCCACTGACCACTCCAGCTGTGT GTCTCAGACTTTTTGAGTTTGATGCATCTGTTAGCTACATGCATGTTGATAAACCCGACTCTTGTCAGGAAAAGGAAGCTAGAGAATACATAAAACTTCC TTCAAGATATAGTCCTTTTAAATCTAGTAGAGTCGCTGAGCCATCAGATTTGGACCATGATGAATTCATGAAAGTTAAATCTGCTCCTATGAAAATCGTA CAAAGCGGCAATAAACGTCGACGAGTGACTGATGGCAAAGGACGGCGTAGAAAACTATCTAAAGGAATGCATGGTTCAAAACAAGACACTGGCCGCCATA TTGTTAAAGTGACCGAGAATCCAAGTCAAAGATTAAAACAGCAGGGACTAGCATCACAAGTAAAAGGTGGTGGAAGTGGCCAACGGACAGTCAGGAAAAG GAGAGTGGATAAGAGAGCTGTTGAAGATTTGTTGCTTGGCAATACCGCAGCTGGTCATAGCAACAAGATCAGTAGAGTACCAATGAGAAGCATGGATGTA GGTTGGGAAGTTAACAAGGCAAGTCCTATAACTCATGTCCACATGGATGTTGCTGATAACAGTAATAGTACTGAAGAGGTGGAATCTGATGATAATGCCG CAGCAGTAGAGTATGATAAAGGAAACTGGGAGATAGGTTTTAGTGGTGTTGCCCCCCACAACAGATGGAGTAATGATTTGGTTGGAATGAGTGATGAAGA TGTGGATGCTTCTGAAGATGACAATGACAATAGCCTTGATGAGCAAGAAGAGGAGTATTCAGAAGTAGATGTTATGAGTGAGGGTTCAGATGGCATTGCA AACAGAGCTGTAGTAAATGAAGACTCAGACTCAGCTGTCTCTGAAGATTCTTCTGATTAGAGCATCTTTTTTAATTGATCAATGAAGGGGTTTGCATCTC AAGTATGCATTACATTTTTGATATTTCAGCTTTACAAGTACCTAATCCCCAAGTCATGCCATGGCTTAAAGAGTTTATGGTTCAGTAGATTCATATGTTA ATAGTGTATACTATCCTTATCCATGCAAAATGGAGCCTTAGTTTTAAGCATGTTAAGCATAGGGCCTGTGTAATAGGTACTCATTAAGTAATAATAATTT ATCATTTCTTGATTAGCTTTTCATTGCTTGCACTCTGAAATATGAAGGAATAATTAGTATGATGACTAATGGAGAATGTTGGCTAACCAAAAATAGAAAG TTATTGTAAAATGATGTGTTTAACATATAGAGAATTTTGGATTTGATTTTTCAGTGCTGACTTTCTCTTTTTGTATTCTTTAACTAGTGGCCTTGGGAC
• Tissue: pods
• Gene name: LI_gene_189906;
• Additional information: details;

Expression of Ll_transcript_474574

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.3
• PS2: 1.2
• PS3: 0.1
• PW1: 0.1
• PW2: 0.2
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_474574

• Blastp: Homeobox-DDT domain protein RLT1 from Arabidopsis with 48.95% of identity
• Blastx: Homeobox-DDT domain protein RLT1 from Arabidopsis with 47.14% of identity
• Eggnog: DDT domain(ENOG4111F53)
• Kegg: Link to kegg annotations (AT1G28420)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019416979.1)
• Pfam: HB1, ASXL, restriction endonuclease HTH domain (PF05066.12)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;