Ll_transcript_472585

• Id Trinity: TRINITY_DN52087_c6_g4_i1
• Name Transcript: Ll_transcript_472585
• Sequence: CTTCTTCATACCCGACCACCAAAACATTTTCTTTAAATCTTGGTACATTTTGGTAGCACTGGGATGAATACTTAACTTACTCTTATGTGCTTCATCTAGG ATTGATCTCCTCAAATCAGAGTCTCTTGGCACACAGACTCTATCCTTGCACTTGAGTACACCACCGTTTCCAATCTGAAATTCTGGGGCTTTTCCTTCAG CCAACAATTTTCTCCTTTCCTGTAGTTCTGGATCTATATCTTGTAGACCTTTCAATTGATTCATGAAGTCACTTGTCATGGTGAGCATTCCACAAATCAA GCTCTTGGGTCCAACTTGTACTGCTAGATTCATATCCCTGAACTCCTCTATCAGTTTCATCTCACTGATCATCAATGTTGCGAGATGCAACGACTTTCTG CTCAAAGCGTCAGCCACCACATTAGCCTTTCCCGGGTGATACTGCAAGTCAAAATCATAATCCTTTAGGAATTCAATCCAGCGTCTTTGTCTCATGTTCA GCTCCTTCTGATCAAACAGATATTTCAAACTTTTATGATAGCTGAAACACCTCAAACCTTACACCATATAGATGATGCCTCCATACTTTGAGAGCATACA CGATCGCAGCCAACTCCAGATCGTGCGTTGGGTAGTTCTGCTCGTGTGTCTTTAGCTGCCTTGAAGCATAAGCTACTACCTTTCCCTGTTGCATCAGCAC ACATCCCAAACCTTGCTTAGATGCATCATAGTACACATGGTAGTTTTCCTTCGGATCTGGTAGAATTAACACCGGAGCGGTTGTTAACCTTTTCTTTAGC TCCTGAAAATTTTCCTCACACTTAGTCGTCCACACAAAAGCCTTGTCTTTTCTTGTCAACATTGTCAAAGGCAACGCTAACTTGGAGAATCCTTCAATAA ATTTGCGATAGTAGCCTGCTAATCCCAAAAAGCTTCTGATCTCCGTCACTGACTTCGGAGAATTCCAGTCCATTACCGTCTCTACTTTCGCAGGATCCAC TGCAATTCCTCTCTTTGAGATCACATGACCGAGAAAATTAACTGACTCTAGCCAAAACTCACACTTCGAAAGTTTAGCATAGAGCTGATTGTCCTTCAAA ATCTGCAACACTACACGCAAATGCTCGACATGCTCTTCTAGAGTCTTTGAATAAATCAGAATATCATCAATGAATACAACGACAAACGTGTCGAGGTACG GATGAAATATTCTGTTCATGTAATCCATGAATATTGCGGGCGCGTTAGTTACACCAAATGGCATCACGAGGTATTCGTAATGGCCGTAACGCGTCCGAAA AACAGTCTTCGGAATATCCTCCGTCTTTACTCGTATCTGATGGTACCCTGATCGAAGATCGATCTTTGAAAACACAGTAGCTCCTCTTAACTGGTCCATT AAATCGTCAATTCTAGGTAATGGGTACTTGTTCTTGATGGTTACTTTATTGAGCTGCCTATAATCCGTGCATAACTGTATACTGCCATCCTTCTTCTTCA CAAGCAAAACTGGTGTACCCCAAGGCGAAACACTTGGTCTGACAAATTGTTTTTCCAACAAACCTTCCCATTGTTTCTTCAGTTTCGTCAGCTCCAACGG TGCCATCCTATAAGGAGCAATAGAGATCGGGGCAGTTCCAGGAACCAGATCGATAGCAAACTCTATCTCCCTTATCGGAGGTAATCCAGGAATATCTTCC GGAAACACCTCAGGAAAATCCATAACTACCGGCAAACTCTGCATCCTTTCATCGCTCTTCTTTTCCAATGACGCGAGTAGAACAAACACTTGAGCTCCAT CCTCCAACAGTTTCTCCACTTCCATGGCATTAGTGCTTGTGGTCTCATACCCCGTTCCAGAAGGTTCATCCATGTCGCTAAAAGTCACTGACTTATTAGA ACAATTCAACATCGCGCGGTTCCTAGATAACCAGTCCATCCCCAAGGTGATGTCTAATTGGGTTAAGGGTAGACATATCAAATCAACAATGAAGGTCCGG TTATCTAAAGTCAAGGGACATTGGGAACATACAGTCGACACTACTACATGTTCATTCGTAGGAGTGGATACAAGCAAATCATAGGGTAAAGACACTACCG GTAAATCTAAACGGTCGACAATATCAGTAGAAATAAATGAATGGGTCGCACCCGAATCAAACAGCACAGATAATGGCATTTCCTTAATATGACATGTACC TTGAATGAGATCTTCATTTGTCTCCACTTCGGTTCCACTCATCGTGAACACTCTGCCTTTAGCCTTAGGTCTTGCTGCTTGGACAGAGTTCACTTCCTCC TTCTTCAACTGAGGGCAGAACGGTCTGATATGACCTGTCTGGTTGCAATGAAAGCATACCGGACAGTGGAAACCATGATGCTTTCCCTTGCACTTCTCAC ACCAAGGCGGTGAGTTGTTACTGAAGTTCTCCACCGACGAGCTCATTCGGCTGTTGCTACTGTTGTTGTTGTTGTTTCTGCTGTTGTTGCTGTTCCCTTG TCTGAAACCCCTGTTGTTGTAGGGTTGAAAACTCCTTGATTGATTCCCCGACGATGAAGCCTGAGATCTCTGATTGCGGTTGAAGGGTCTTCCCCTTCCA AACCCCTGACCAGAACTCCTTTGAGGTCCATAAGAGGTCGTAGGTTGCACAACACTCTTCAACGTCGCATTTCTTGCCTTAACACTCTCCTCATACAACT TGCATTTGTTGACCAGAGTTGCAAAGTCTGGTATTTGTTGATGCAGAAACGCTACTTTCAGATCCGGCTTAAGTCCGTCTTCGAACTTAGCACACTTCGA CCTCTCATTACCCACTTCATTGTAGTGGGGAGCATACCTGGCTAATTCCTCGAACTTAGCCGCATACTCGACCACCGACAAACTCCCCTGCTGAAGGCGC AAAAACTCCATTTCCTTCTTAGTCCGCATGTCTGCAGGAAAGTACTTTTGAAGGAACTTGTCCTTAAAAGTAGTCTAGTTAACCATCTGGTGTTCATGCA CCATCTGCAGCCTGGTGAATTCTCACCAGTTTTCAGCTTCCTTTGTCAGCATGCAGGTCGCATAAGTGACCTTCTGATCCTCGGTACACATAAGTGCCCG AAATATTCTTTCCATCTCCTGAATCCACTCATTTGCAGCCTCAGGCGCAAATCCACCTTCGAATTTCGGGGGTTGCCTACGGCAGAACTCATCCAGACCC CGATACTGAGCCGATCCTTGACTCGATTGGCTTTGTTGCTATTGTTGATTCAGCTGGTGTAGATTAGCATTCACACACTGAATCGCTGCGGTCATCGCCG CCATGAAATCTAGGTTCGCAAATCCTCTTCCAGCCATTCTAAATCTGTAAACAGAAATCAGGTGAGATACTCCTCATCACCACTCTTGTCCACAAGGACT ATTACTTCAGTCAATACTTCCAATCCACACAATCCATTTAACACACCAAGTCACACAAGAAAGCGTGTAAGGCCATACTCAGGCCGAATAGGAAAGAGCC GCTCTGATACCACCTTGTAACGCCCCGAAAAATACATCTAAAAAACATTGCGGAAAAATGGGTAATTTTTTTTTTTAAATGAGTTATG
• Tissue: pods
• Gene name: LI_gene_189943;
• Additional information: -

Expression of Ll_transcript_472585

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.4
• PS2: 0.1
• PS3: 0.2
• PW1: 0.5
• PW2: 0.5
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_472585

• Blastp: Retrovirus-related Pol polyprotein from transposon 17.6 from Sophophora with 32.29% of identity
• Blastx: Transposon Ty3-I Gag-Pol polyprotein from Saccharomyces with 39.23% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_012575125.1)
• Pfam: Retrotransposon gag protein (PF03732.16)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;