| Id Trinity | TRINITY_DN52089_c1_g1_i10 |
|---|---|
| Name Transcript | Ll_transcript_472435 |
| Sequence | AAAATAGCAAAAAAAAATTACACTATGATACTTATTTAGTGTTTTGCCATTGGATACTTGCCTACATCTATTGTTTAAGGTATTTATTTGTCAACATTTC TAAGATTAAGACGGTTGATATCTGTCCCTTCAATATACGCGTTAGTAATGCTCTTTAAATATGACAATTGTCTTTGTCTTCTGTGTCACAGAAGAAAACT GAAACCGGCACTCAGATTTATAGTCATAGTCAAACTATGAAGCACTATTCAAAACTCAAAAACTTCCATGTGATTTTCTTAGTTCTTTTTCCTAATGCAC TTATGTAGTTTTGAGTTGTGAATTCTGATCCTTTTGTTTCATGAATTTTGCCTCCACTACATTCTTCTATATATGCTGATTCCTTAAGTGCAGTACATGA AAAAGTGTTTAGTTTATGTAGCACCTTTGAAGATTTCCTTGCCATGATGGTGTTTGAGATAAACAATGATTTTGTGCAGGTTATTGGGGTTATCTCTGCA ATTCTATTATTGGTATCATTAAGAGTCAAAGTAGCATCATGTGATGAGTACCCTGCTATGCATTGCAGAAAACACAGTGCATTTTTGACTGATTTTGGTG GGGTTGGTGATGGCAAAACATGCAACACCAAGGCCTTTCAATATGCTATTAGCAATCTCAGCCAATATGCATGTGATGGGGGAGCACTACTTGTTGTTCC ACCTGGGAAATGGTTAACAGGAAGCTTCAATCTAACTAGCCATTTCACCCTTTTTCTTCAAAAAGATGCTGTTATTCTTGCTTCTCAGGTTTTTACTTAC TCCCCCTTTTTCTCAACAATCATAAATTCATAACCTTGCATATGCATAGTTTTATTATTTGATTACAATTACAAAAAACACCTCTTTTCTAGGATGAAAA TTGTTATAAGTTACCCACATTAGGGAAGTGATTTAGCCATTAAATAGGTAGGATGAATTATTGGTTTGCTTTATTGTGAATGCTGTGATCTAATGATGTG GTAACGTCAACAAAATCCTTAGTTCAAAGCACATCCTAGTTAGTAACACAGTTAGTCTTTCAAGTTTCAACAATGATACTCAACAAACACATGAGTGACA GAGGACAGAAGTTAGAAGATAGGATTGGTTTATAGTAGTGCAATGTTTAACTTGCTTTCTTTTCTGTATGGCACATGTGCACCTTTTTGTAATTTTCTTT TTGATGAGATGACACATGTTCACATTATTTTCCCCTGTAGAATATATAAAATGGAAGATGCTTAACAGTTGCTAGCAAAGAAAAAAAGGGTATAGCTTTT TAATGTTGTGGTGAAGCCCATTGACTAGAGATTCATGCATGCAATAAAATAACTAGAAAGTTGGGTATCTAATTTCCTATTTCTGATGTTTTGTCAACGG ACATATTTATAATATAACATTATGGCATCGTTCGACTCATTTAGCTGACCTCACCTAATGAGATTACGGTTTGGTTGTTATTGTTGTAATTTCCTGTATC TCTCACATACCAATGATTTCTTGGCATGTTAGTTCAGCATCCTTTGACTTCACAATATTGGTGAACATTGACAGGATGAATCAGAATGGCCTCATCTTCC TGTCCTACCATCATATGGCAGAGGAAGAGATGCTCCTGGTGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTTATAATTACGGGTAAC GACTACAGGACCCTTTGTTATACCTCTGTTAGAACTCATTTTAATGACATCTACTTTTAATTTTTTGCTCATTAGGCTACAATGGAACAATTGATGGACA AGGATCTTATTGGTGGGACAAGTTCCACAGAGGTGAATTGAATCTCACGAGGCCATACTTGATTGAGATTATGTTCTCAGATCATATCCAGATATCAAAT CTTACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGGTTTGACAAGGGTTTTATTTTGCATTCATGGTTAATCTTGATGCATTATA TGTTCGGTTATTCATATCAAGCCCGAATATCTGCAGCGACATTATAATTCAAGGGCTAACCATTTTTGCGCCAGTTGACTCTCCCAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_189957; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_472435
| Blastp | Probable polygalacturonase from Vitis with 65.22% of identity |
|---|---|
| Blastx | Probable polygalacturonase from Vitis with 72.88% of identity |
| Eggnog | Glycoside hydrolase family 28(COG5434) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019450638.1) |
| Pfam | Pectate lyase superfamily protein (PF12708.6) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |