Id Trinity | TRINITY_DN52089_c1_g1_i3 |
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Name Transcript | Ll_transcript_472424 |
Sequence | AAAATAGCAAAAAAAAATTACACTATGATACTTATTTAGTGTTTTGCCATTGGATACTTGCCTACATCTATTGTTTAAGGTATTTATTTGTCAACATTTC TAAGATTAAGACGGTTGATATCTGTCCCTTCAATATACGCGTTAGTAATGCTCTTTAAATATGACAATTGTCTTTGTCTTCTGTGTCACAGAAGAAAACT GAAACCGGCACTCAGATTTATAGTCATAGTCAAACTATGAAGCACTATTCAAAACTCAAAAACTTCCATGTTATTGGGGTTATCTCTGCAATTCTATTAT TGGTATCATTAAGAGTCAAAGTAGCATCATGTGATGAGTACCCTGCTATGCATTGCAGAAAACACAGTGCATTTTTGACTGATTTTGGTGGGGTTGGTGA TGGCAAAACATGCAACACCAAGGCCTTTCAATATGCTATTAGCAATCTCAGCCAATATGCATGTGATGGGGGAGCACTACTTGTTGTTCCACCTGGGAAA TGGTTAACAGGAAGCTTCAATCTAACTAGCCATTTCACCCTTTTTCTTCAAAAAGATGCTGTTATTCTTGCTTCTCAGGATGAATCAGAATGGCCTCATC TTCCTGTCCTACCATCATATGGCAGAGGAAGAGATGCTCCTGGTGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACTGATGTTATAATTACGGG CTACAATGGAACAATTGATGGACAAGGATCTTATTGGTGGGACAAGTTCCACAGAGGTGAATTGAATCTCACGAGGCCATACTTGATTGAGATTATGTTC TCAGATCATATCCAGATATCAAATCTTACTTTGATCAATTCTCCATCTTGGTTTGTCCATCCAATTTACAGCAGGTTTGACAAGGGTTTTATTTTGCATT CATGGTTAATCTTGATGCATTATATGTTCGGTTATTCATATCAAGCCCGAATATCTGCAGCGACATTATAATTCAAGGGCTAACCATTTTTGCGCCAGTT GACTCTCCCAACâBLAST |
Tissue | pods |
Gene name | LI_gene_189957; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_472424
Blastp | Probable polygalacturonase from Vitis with 73.33% of identity |
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Blastx | Probable polygalacturonase from Vitis with 73.33% of identity |
Eggnog | Glycoside hydrolase family 28(COG5434) |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019450638.1) |
Pfam | Glycosyl hydrolases family 28 (PF00295.16) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |