Id Trinity | TRINITY_DN52091_c1_g3_i6 |
---|---|
Name Transcript | Ll_transcript_474269 |
Sequence | GTTCTTCCTCTCCTTGTCAACAACACCAACACACACACTTCCTTTTTCTTCTCTCTCTCTCTCTCTCTCTTCTTCTGTGACAACGATAAACGAAGTTTCC TTCCGCAAATTTTTAACCTTTGACTTCTAAGTCTCCTCTGTAATTTCCCTTTGATTCTCTCTCTTTTGCTTTCTGGGTCAATCAAAGTTCCAACCTTTTT CTCATTTCGATAGATCTAATACCAAATCTTTTTACTTTCTTCTACTGGGTCGGGTTCCTCCTTTCTCAAATTCCTCATCAGTTTTGGGTTTAGTTTGATT ATGCTGCTTTGGTGGCTCTGGAAATTCAAACTAATCGCTTCTTAATCTTTTTTGTTGTTGTTGTTGTTGTTGTAGTAGTAATAGTTTTGATGTGTTAAAA TTTGCAGATATATCATTTTTTTCTTGTTCCATAGGGTGATTTAAGATTTATATTGAAAGTTTGACTCTTTCTTAGATTTCATGTATTTGGTTAATATTTT GCAGCCACCACTTGTTAGATAAGTGTTTTTCATTCATAGTTTCTATTTATAAGATGCTTCTGCTTTTTTCCCTTTTTGGTTTTTGCTTCTATTAGTCATT ACAAAAGTTATTGGAACTTAATTTGTGAGGGGACATTAAAGTGTGATGTCTTTGAATATGTTCTACCTTTCTAGGATCAATTAGGTTCTCAAGTGGATTT AATGGCTCATTCAGCTGAACCCTCATCATCTTTAAGCTTTACATCATCTTTATCGAATGGTTCAGTCAACCACAACATGTGTACTTCTTATGGCCCTGAT CCCGGTCTTAACCTTGATGTCGTAAGTTTGAATAAGCTTAGCTCTAATTTGGAGCAGCTTTTGGTTGAATCTGGTTCTGATTATAGTGATGCTGATGTCG TAGTTGAAGGAATTCCGGTCGGTGTTCATCGATGTATCCTGGCCTCTCGGAGTAAGTTTTTCAATGAATTGTTCAAGAAAGAGAAAAATTCATCAGAAAA AGAAGGGAAATTGAAGTATTTCATGAGTGATATGTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCAACATATTTCTAGGCTATGTATATACTGGAAAA CTAAAGCCCTCTCCGACCGAGGTATCTACTTGTGTTGACAATGTGTGTCTTCATGATTCCTGTAGACCTGCAATTAACTTTGCTGTGGAATTGATGTATG CATCATCTATTTTTCAAATACCGGAGTTGGTATCACTTTTCCAGGTAAACATTCTATTTTCATAATTTAATTAAGTGATAAGCCATGACTAGTTACTTGG TCCTTTTTAGCAATACTCAATATCTTAATTCTGTAGTAATGATTTTCCTGTATGTCCATTATTATGCATTGTCAATATTGCAAATTGTGAGTTTAAGTTT AGAAATGGGGAAAAATGGAAATATCCGGTGGCACACATTAACGCCAAGAAAGAAACTGTGAATGATGAAGTTGAGGGATTTCATTTTAATTAGGATTAAT TGTTAATTCAACCAAACTTTTATATCATTTGATTCTGGAGGAGTCTGAAATTGATCTTTATAATTAGTGTACCATATATGTTGCTTTACTTAGCCTCATA CCTCGTACAGATCTCGTGCCTAGGCACTATGTATTTAACTTAGCTCCATAGTAGCTTTATCAAAGTATTGACTATTGAAAACAATGGACTCTATTTGATG TGCTAATCCTTGGAAAAAGTACATTCAAATTAACTTTGCATTTAAATTACTACCAATGTTGTGTCTGATCAAGCTTGAGGGGCAAGAAACTACTTAATAC TTTAACTTTTGCAGAGACGTCTTCTTAACTTTATAGGAAGGGCACTTGTAGAAGATGTTATACCGATTCTCATGGTTGCTTTCCATTGTCAATTGAGTCA ACTTGTCACTCAATGTGTTGACAGGGTGGCACGATCAGACCTTGACTGGATCTCTATTCAGAAAGAGCTTCCCTTTGAGCTATCAGAAAATGTTAAATTG CTCCGCAACCCTAAAAAAGAAGTTGAAAATGATGATCCTCCTGTAGTGGACACTATATCTCTAAAACGAATCGGTAGAATACACAAGGCATTAGACTCAG ATGATGTCGAGCTTGTTAAACTTCTTTTGAATGAGTCAGACATCACTTTAGATGGAGCCAATGCTCTCCATTATGCTGCAGCCTACTGTGATCCGAAGGT TGTTTCTGAGGTACTTAGTTTGGGTCTGGCTGATGTCAATCTTCGGAATTCTCGGGGATACACGGTTCTTCACATTGCTGCCATGCGTAAGGAGCCTTCC GTTATAGTGTCACTTCTTACAAAAGGGGCTATTGCATCAGATTTGACATTTGATGGTCAGAGTGCTGTTAGTATTTGCAAGAGGTTGACAAGGCCAAAGG ATTATCATACAAAAACAGAACAGGGGAAAGAAACAAACAAAGACCGGATATGCATCGATGTCCTTGAAAGAGAAATGCGGAGGAATCCATTGGCTGGGGA TGCCTCTATCTCATCCCACACAATGGCCGATGATATCCACATGAAGCTACTATACCTTGAGAACAGGGGTATGGTGAAATGGATGATAATCTTTAGCTCT TTGCTTTTCTTTTATACATTATCCTCATGGATTGTGCATCCAAGTTTTAAAATGCTTTGATTTCATGCCTTGGAGTGAAAATTCCCAAAACTAATGTACT TTAACAACCAGAGATAATTTTCATATAACTGCTCTGATTTATATTTTTCTTTTCTTTCTCTCTTTCTACATACCTTTTTGTTAATTATTTTCCTTTTAAT TTGTTGATAATTAGGAACTTGCATACTTTTTTGAGGAAAATCTATTGTTGATAACTGATTATACTTTGTTCATGGGATATTTATACTCAAACCATCAAAT AAGAAGGTAATACTTACTGCCCATTGCAGTGGCATTTGCGAGGGTATTGTTCCCTTCGGAAGCCAAACTAGCCATGGACATCGCACATGCCGAGACAACA TCGGAGTTTGCTGGTATTTCTGCACCTAAAGCTTCAAATGGAAGCATCAGGGAGGTTGATCTCAATGAGACTCCCATAATGCAAAACAAAAGACTTCTTT CTCGGATGGAAGCCCTAATGAAAACAGTGGAGATGGGGCGACGCTATTTTCCTCATTGCTCGGAAGTGTTAGATAAGTTCATGGAAGATGACCTGCTTGA TTTATTTTATCTCGAGAAGGGAACCCGAGAAGAGCAAGGAGTGAAGAGGAAGCGTTTCATGGAGCTCAAAGATGATGTCTACAAGGCTTTCACCAAGGAC AAGGCTGGGTTCAGCCGCACCGGAATTTCAACTTCATCATCCTCTTCATCCCTCAGAGATTCTGTACATTACAAAGCTAGGAAAGTGTGAAAAGCATAGT TTCTCTATGACTTGCATACACATATATAGTGCAAATTTTAAATGGTGATATAGCTACCATCTCTTCTGTATCTGAAAACACAAAGTGGGAAAGTTGATCT CTTACTATCTTTTTTGTAATCAACTTGTTCAAGTATTTTGAAAATAATCTCCTCTCCCCTTTACAGTACAGATTATGTAAGAAATTACATGGAGTCAATT TTTTGTATTGCTATTTCCTATGATACTTTTTGATATACTCTTTAGCTATAAGATATTAATAATTTAAAACTTGTTATAGTAAATCATTGTGATGAAGTTA CTGTTCTGTTGTACTTAAT BLAST |
Tissue | pods |
Gene name | LI_gene_189978; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_474269
Blastp | Regulatory protein NPR4 from Arabidopsis with 64.81% of identity |
---|---|
Blastx | Regulatory protein NPR4 from Arabidopsis with 62.5% of identity |
Eggnog | Ankyrin Repeat(COG0666) |
Kegg | Link to kegg annotations (AT4G19660) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019419190.1) |
Pfam | Ankyrin repeats (3 copies) (PF12796.6) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |