| Id Trinity | TRINITY_DN52102_c1_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_429438 |
| Sequence | ATCTTATTTATTACAAATGAGAAGGCTAACTCTACAAAATTTTGGGATATTTGATTATTGAAATGGTATTAGAGATTCATTCTAACCAAGTGATCAAAAG ATCAGTGTTTTCTGTCCCATTCTCTTAGTTAATTAAAATTTAGACCATGTAAAAATGGGCCTGTGCTTTAAAATGCTTTTGTATGAGGGGTAATATTAGA TATAAAAGCTATTTCTACTTTTCTAGGCTTGTACCTAATAGCTTAAGGTCTGGATGTAGTTGGTTCTTGACACTAATTTCTAGCCTTTTAGCAATCTTCA AATAAAATGTGCATGCTGTGGAACTCTAAGGAGGGACAACAAATTAATGTTACAGTGTCCATAATGAGTGCGAGCAATGTAAGAAAGGGCAGCACAATGT ATAAGACTCCCATCTAGCATGGTCTGTGCAGGGCAAATATACTCAACCTTATTCTTCATGCTAACTAAGTAGCAACTAGAAACCTTACCGTTTCGTCAAA CTTACCCTCTTCTTTAAAAGATGTGCAACACAAGAACTTCCCAAGAGGTCGCCATCCTACTAGTACTACTATGCTCGCCCAAGAACACTTAAATGTTGAG TTCTGATGGGATCTGGTGCAGGCAATGTGATTAGGTTTTTTTGTGAGTACCCTTTCATGCAGAAGGAGGGGTATTGTGCCAATAATGGTTTAATGAATTA ATGGTATTCAGTCTGTTGACTTTTTGCATCAATTGGTCAGTGATGCCAAATAATGAATTTTGTATTGTTGATTGAAATCCAACTTTCAGGATATGGTGAC AAAGAACAAACTGGTATACTCATTTGATTCAACCAAGAAAGCTCGTTTCGGTATACTACCTCGATATGCTAAGGACGAGAAGCATATTAGATGGTTTGAA CTTCCAACCTGCTTCATTTTCCACAATGCCAATGCCTGGGAGGAGGAGGATGAAGTTGTTCTAATCGCATGCCGCATAGAGAAACCAGATTTGGACTTGG TCAGCGGATCTCTCAAGGAAAAGCTTGAAAGTTTCGCAAATGAGCTGTATGAAATGAGATTTAACATGAAAACTGGTGAGGCTTCTCAAAAGAAACTATC AGCACCTGCCCTGGATTTTCCGAGGGTGAACGAAAACTACACTGGCAGGAAGCAGCGATATGTATACGGAACCATATTAGGCAGCATTGCAAGAGTTACT GGGATTGTTAAATTTGATTTGCATGCACAACCAGAGCCTGAAAATACAAAGCTGGTAGTTGGAGGAAACGTTCAGGGTATATATGACTTAGGACCAGGGA GATTTGGCTCAGAAGCTATTTACGTCCCTCGTGTTCCTGGCACCACTTCTGAAGAAGATGATGGATACTTGATCTTTTTTGTGCACGACGAGAATACAAA AAAATCCTATGTGCATGTGGTTGATGCAAAAACAATGTCAGCAGATCCGGTTGCAGTCGTGGAGTTGCCACATCGTGTTCCATATGGATTCCATGCCTTC TTTGTGACAGAGGAGCAACTACAAGAACAGGCAAATGTCTGAGACAGCCACAATATTATGACTTATTGCCCAAGATTGTTGAGATAAATGATATTATAAA ACTATTTCATTTACATAAGGGTACATTTGATGAAAATACACTTAAAGTTCATTCATTATTATATAACAATAATGTTGACCGGGCACTGAGGTGAGGAAGT ATAGGAGTAATTAGAGGATCATTTCATGTGTAAGGAAATATTTTAGTCAAGGACCTTCATATTCAAAACTAATAACTCACCATCTATCATGTGTTAAAGG ATCATGCACTACCCATAATCCCATAAATGGCCATCTTGCAATCCACAATGGACAAGATAAGTTCAAAGAAACTCACAACTTTGATCATTCTATTTTTCAT AGCTTTTCCTCTTGCTCTCACTGCTAACTTAATGTTCCGAACCTCAACATTTGCACTTTTTGAGTTATTTTCTCAAAACAAGGTAGCCATGAAAAATGCT TCATTACCAACTTCAACAAATGATCCAACTTCAAGTTCAATTCGCGATAAAAAGAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_190070; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_429438
| Blastp | Carotenoid 9,10(9',10')-cleavage dioxygenase 1 from Pisum with 81.78% of identity |
|---|---|
| Blastx | Carotenoid 9,10(9',10')-cleavage dioxygenase 1 from Pisum with 81.12% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426194.1) |
| Pfam | Retinal pigment epithelial membrane protein (PF03055.14) |
| Rfam | 5S_rRNA (RF00001) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |