Ll_transcript_431369

• Id Trinity: TRINITY_DN52108_c0_g3_i1
• Name Transcript: Ll_transcript_431369
• Sequence: ATTGTCGAACCACATTAAATTATCGGTGCCATTTTCTCTATTATATTTTCTCCATATTTTTCCGCACCAACAAAGTGGTATCAAAGCTTGTAGAACTCTC GCATGCTAGGACGTACGATTTAAAAGAAAATTCTTAGTATGTTCTGTGTCTGTAGCATTGTCTGATCTTACACACCAAAAAAGAATTGTTCTTGTTGTTG GAAAGTATAGTAGTATGGAAGTGCATGTCTAGGAAAGTTATGTCTTAGGAAAGACCTGATATTTAAGCGTGTCTGATAAGACCCACCTCTCTTTCTCGGG AACTTTCCTGGTGTACAGTCACGAATTACGACATTGTTCCAGTATCCAGTTATCATGGCGAATGATAAATTTGATTTGGAGAAATTTAATGGAGAAAATG ATTTTAACTTATGGCGATTGAAGATGAAAGCTCTACTAGTTCATCAATGCTTGGGAAAAGCCTTATAAGGTAGGAACAAGCTACCATAGAGTCTGACCGA GGATGAGAAGGATGAAACACTAGAAAAATCATATAGTGCAATCTTGTTGTGCTTGGGAGATGAAGTTCTACAAGAAGTGTCAGATGAAACTACAGCTGCA TCATTATAGTTGAAGCTGGAAAGCCTGTGTATGACGAAGTCACTCACCAACAGACTGTATTTGAAGAAAAGAGTATATACTCTTCAAATGCAGAAAGGAA GACTCATAAAAGATCATCTGGATGAATTTAACAAAATTATTCTTGATCTAAAGAATATTGATGTTAAAATTGAAGATGAAGACCAAACAGTTCTTCTACT ATGTTCCCTTCCGAGTACTTATGAACACTTCATTGACACCATAATGTATGGTCGAGAAGACCTGACATTGGATGAAGTAAAAGCTGCATTGCACTCGAAA GAATTGAAGAAAAGAGTATCGGATTCAAGATCTGAAGGCTCAAGTGAAAGTCTTTTTGCCAGAGGATAAAGTATAAATGCTTTCACTGTCACAAGGAAGG ACATATATGAAAGAATTGTCCAGAGCGCAAAGGCAAGGAAAAGATCTATGAACATGGAGATGCAACTGTTGAATATGACTATGATAGTGGAGATGTACTA ACAGTCTTTGAACAGAGACACTAAAATATAAGACACTTGATCAAGGAGAAGTTCATGATGCATGTGTTGATACTGATACCTCCCAATTGCAACATTATTA GTTGGCTAGGGACAGACAAAGGAGACATATAAAACCTCCTGAGAAGTATGGTTATACTGATCTTGTGTCGTATGCTCTAAATGTTGTTGATGATATTAAC AATTGTGAACCACAGTCATATGAAGAAGCTGTCAACAACAAAGAAGCTTCCAAATGGATTTATGCCATTACTGAGGAAATTGAATCTCTTCATAAGAATC ATACTTGGATTCTTGTGAAACAGCCAAAGGATCAAAAGATTGTTGGATGTAAATGGGTTTTCATAAAGAATGAATGAATCCATGGGGTTGAAGATGCAAG ATTTAAAGCGCGATTAGTGGCCAAAGGTTTTACACAAAGAGAAGGTGTTGATTTTAATGAAGTTTTCTCTCATGTGGTAAAACATAGCTCTATTCGCATC CTACCTGCAGTTGTAGCACAATTTGATCTAGAACTTGAGCAATTAAATGTCAAAACGGCATTCTTGCACGGTGAGTTGGAGGAACAAATCTACATGAAAC AACCTGAAGGTTTTGAAGTTCAAGGGAAGGAAGATCATGTTTTCTTACTGAATAAATCTTTGTATGGCCTAAAACAATATTCCAGACAGTGGTACTGGCG GTTTGATACTTTCATGCTCGAAAATGGCTATTGTAGAAGTGAGCATGATAATTGTGTTTACTACAAGAAGCTTGCGAATAA
• Tissue: pods
• Gene name: LI_gene_190125;
• Additional information: details;

Expression of Ll_transcript_431369

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_431369

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 48.28% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 52.88% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_014617136.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;