Ll_transcript_431376

• Id Trinity: TRINITY_DN52108_c0_g3_i2
• Name Transcript: Ll_transcript_431376
• Sequence: CACCCGTGGACGTAGGCAAATTGTCGAACCACATTAAATTATTGGTGTCGTTTTCTCTATTATATTTTCTCCATATTTTTCCGCACCAACAAAGTGGTAT CAAAGCTTGTAGAACTCTCGCATGCTAGGACGTACGATTTAAAAGAAAATTCTTAGTATGTTCTGTGTCTGTAGCATTGTCTGATCTTACACACCAAAAA AGAATTGTTCTTGTTGTTGGAAAGTATAGTAGTATGGAAGTGCATGTCTAGGAAAGTTATGTCTTAGGAAAGACCTGATATTTAAGCGTGTCTGATAAGA CCCACCTCTCTTTCTCGGGAACTTTCCTGGTGTACAGTCACGAATTACGACATTGTTCCAGTATCCAGTTATCATGGCGAATGATAAATTTGATTTGGAG AAATTTAATGGAGAAAATGATTTTAACTTATGGCGATTGAAGATGAAAGCTCTACTAGTTCATCAATGCTTGGGAAAAGCCTTATAAGGTAGGAACAAGC TACCATAGAGTCTGACCGAGGATGAGAAGGATGAAACACTAGAAAAATCATATAGTGCAATCTTGTTGTGCTTGGGAGATGAAGTTCTACAAGAAGTGTC AGATGAAACTACAGCTGCATCATTATAGTTGAAGCTGGAAAGCCTGTGTATGACGAAGTCACTCACCAACAGACTGTATTTGAAGAAAAGAGTATATACT CTTCAAATGCAGAAAGGAAGACTCATAAAAGATCATCTGGATGAATTTAACAAAATTATTCTTGATCTAAAGAATATTGATGTTAAAATTGAAGATGAAG ACCAAACAGTTCTTCTACTATGTTCCCTTCCGAGTACTTATGAACACTTCATTGACACCATAATGTATGGTCGAGAAGACCTGACATTGGATGAAGTAAA AGCTGCATTGCACTCGAAAGAATTGAAGAAAAGAGTATCGGATTCAAGATCTGAAGGCTCAAGTGAAAGTCTTTTTGCCAGAGGATAAAGTATAAATGCT TTCACTGTCACAAGGAAGGACATATATGAAAGAATTGTCCAGAGCGCAAAGGCAAGGAAAAGATCTATGAACATGGAGATGCAACTGTTGAATATGACTA TGATAGTGGAGATGTACTAACAGTCTTTGAACAGAGACACTAAAATATAAGACACTTGATCAAGGAGAAGTTCATGATGCATGTGTTGATACTGATACCT CCCAATTGCAACATTATTAGTTGGCTAGGGACAGACAAAGGAGACATATAAAACCTCCTGAGAAGTATGGTTATACTGATCTTGTGTCGTATGCTCTAAA TGTTGTTGATGATATTAACAATTGTGAACCACAGTCATATGAAGAAGCTGTCAACAACAAAGAAGCTTCCAAATGGATTTATGCCATTACTGAGGAAATT GAATCTCTTCATAAGAATCATACTTGGATTCTTGTGAAACAGCCAAAGGATCAAAAGATTGTTGGATGTAAATGGGTCTTCAAGAAGAAGGAAGGAATCC TTGGGGTTGAAGATGCAAGATTCAAAGCACGATTAATGGCCAAAGGTTTTACACAAAAAGAAGGTGTCGATTTCAATGAAGTTTTCTATCCTGTGGTAAA ACATAGTTCTGTTCGCATCCTACTTGTTGTTGTAGCTCAATTTGATTTAGAACTTGAGCAATTAGATGTCAAAACAACATTCTTGTATGGTGAGTTGGAG GAATAAATATACATGAAACAACCTGAAGGTTTTGAAGTTCAAGGGAAGGAAGATCATGTTTTGCTTACTGATGAAATCTTTATATGGCCTAAAACAATCT TCCAGACAGTGGTATCGGCAATTTGATACTTTCATGCTCGAAAATGGCTATTGTAGAAGTGAGCATGATAATTGTGTTTACTACAAGAAGCTTGCGAATA AGTCATTCATCTATTTGCTTTTATATGTGGATGACATGTTGATCGCATGTAAGAACATGTCAGAAATAAGGAACTTGAAGGCTCAATTGAGCTCAGAGTT TGAAATGAAGGGTTTGAGAGCTGGAAGGAAAATTCTGGGAATGGAGATTCATAGGATAGAAAAAGAGGGATACTCTTTCTGTCACAAAAGAAATATATTT AGAAAGTGTTGGTACCAGTCACTACTCCATTGGCGATTCATTTCAAACTTTCATCAGCCTTGTGTCCACAATCTGAGAGTGAAAAGGAGATGTCAAATGT ACCATATGCTAGTGCAGTTGGTAGTCTTATGTATGCCATGGTGTGCACTAACTAGATATTGCACATGCAGTAAGTGTGGTAAGCAGATATATGGCAAGTC CTGGTAAAGTTCAGTGGAAAGCTGTGAAGTGGATTATGCGCTACCCAAGGGGTACCACGACTTTTGTATGGAAAAGTAAAAGAAGTTTGAGGCAAGATCA TCGGATATGTAGACTCGGATTATGCCGGAGATCTAGATAAGCAAAGATCACTCACCGAATATGTCTTTATATTGTGCAGTTGCATCATTAGTTGGAAAGC AACACTACAATCAATTGTTGCCTTGTCTACAATTGAAGCAGAGTGCATTGCAGTAACAGAAGCCGTAAAGGAAAGCATTTGGGAAAAAGGATTAATTGAA GAGTGGAGTATACAACTCGAAGAAACAATCATCTACTGCGATAATCAAAGTGCTATCATCTAACAAAGAATCCAATGTATCATGAAAGAACTAAACATAT TGATGTTCGGATGCACTTCATCAGAGATATCGTGGAGAAAAGAATTGTTAGAGTAGAGAAAATACCCACTACAGATAATCCGCCAGACGATGACGAAGTC AGTTTCAACATTCAAGTTTAGACATTGTCTGGACTTGATTGATGTCCAGAATCTCTAGTAGGCATGAAGAAGAGTAGCAAGAGTATAACTATGATGGCCT TTTAGCCAAGGTGGAGATTTATTGAATATTGGCTAAAAGAAAAGGATATTGAAAAGACTTTCTTGTAACCAAGGAAAGAAAGGAAGAGGTTATAAACCAT CTTGGAGAAA
• Tissue: pods
• Gene name: LI_gene_190125;
• Additional information: details;

Expression of Ll_transcript_431376

FPKM

• PAB: 0.1
• PNAB: 1.1
• PS1: 2.8
• PS2: 2
• PS3: 2.1
• PW1: 1.4
• PW2: 2.3
• PW3: 1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_431376

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 48.28% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 54.11% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019418558.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;