| Id Trinity | TRINITY_DN52108_c0_g3_i3 |
|---|---|
| Name Transcript | Ll_transcript_431382 |
| Sequence | ATGTTAAAATTGAAGATGAAGACTAAGAAATTCTTCTACTATGTTCTCTTCTTCCAAGTTCTTATAAACACTTCATCGACACCATGATGTATGGTCGAGA AGATCTGACATTGGATGAAGTAAAAGCTGCATTGCACTCGAAAGAACTAAAGAAAAGAGTATCAGATTCAAGATTTGAAGGCTCGGGTGAAAATCTCTTT GCTAGAGGAAGAACGCAGAGGCAAAATAAATATGCTGAAAAAGGGAAATCTAGGTCCAAGTCTAAAACGAAGTCTAGAAAGTATAAATGCTTTCACTGTC ACAAGGAAGGACATATATGAAAGAATTGTCCAGAGCGCAAAGGCAAGGAAAAGATCTATGAACATGGAGATGCAACTGTTGAATATGACTATGATAGTGG AGATGTACTAACAGTCTTTGAACAGAGACACTAAAATATAAGACACTTGATCAAGGAGAAGTTCATGATGCATGTGTTGATACTGATACCTCCCAATTGC AACATTATTAGTTGGCTAGGGACAGACAAAGGAGACATATAAAACCTCCTGAGAAGTATGGTTATACTGATCTTGTGTCGTATGCTCTAAATGTTGTTGA TGATATTAACAATTGTGAACCACAGTCATATGAAGAAGCTGTCAACAACAAAGAAGCTTCCAAATGGATTTATGCCATTACTGAGGAAATTGAATCTCTT CATAAGAATCATACTTGGATTCTTGTGAAACAGCCAAAGGATCAAAAGATTGTTGGATGTAAATGGGTTTTCATAAAGAATGAATGAATCCATGGGGTTG AAGATGCAAGATTTAAAGCGCGATTAGTGGCCAAAGGTTTTACACAAAGAGAAGGTGTTGATTTCAATGAAGTTTTCTCTACTGTGGTAAAACATAGCTC TATTCGCATCCTACCTGCAGTTGTAGCACAATTTGATCTAGAACTTGAGCAATTAAATGTCAAAACGGCATTCTTGCACGGTGAGTTGGAGGAACAAATC TACATGAAACAACCTGAAGGTTTTGAAGTTCAAGGGAAGGAAGATCATGTTTGCTTACTGAGGAAATCTTTATATGGCCTAAAACAATCTTCCAGACAGT GGTATCGGCAATTTGATACTTTCATGCTCGAAAATGGCTATTGTAGAAGTGAGCATGATAATTGTGTTTACTACAAGAAGCTTGCGAATAAGGATTTAGG AGCTGGAAGGAAAATTCTGGGCATGGAGATTCATAGGGATAGAAAAGAGGGAACATTCTTTCTGTCACAAAAGAAATATATTGAGAAAGTGTTGGAACAT TTTGGCATGAAAAATGCTAAACCAGTCACTACTATATTGGCGATTCATTTCAAACTTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_190125; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_431382
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 45.45% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 47.89% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019435951.1) |
| Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |