| Id Trinity | TRINITY_DN52135_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_431327 |
| Sequence | CTTTATTCTCTTACACTCTTCTCGTGAAATTATAAAAATAAAATATTACAATTTCATAATCATCATCATCATTATTATTCAATTATATTATATCCCTAAT TGTTGATACTCCATGGATATGGAGAACGAACCGAATCATGAAACCGAAGAAGAAGCTGAATTACAGGAACATGATGATGATGATGAAGAAGAAGAAGAAG AATTGGTTGGTAAAGTTAACAAGCTTATGGACAAAATCACTGCCTCCGTTGATAACCCTAAACCCACCGTTCTTCACGCTCTTGCCTCCATTCTTGAAAA TCAAGAGTCTCGATACATGGAAGAGAATGATCATTTTTCCACAAATAATGGACGTGCTGCTCATAACATTGGGCGTCTTGGAAGTGTTATCAGGGAAAAT GATGAGTTCTTCGAGTTAATATCTTCTAAGTTTCTATCAGAAACAAGATACTCAACGTCGGTCCAAGTTGCTTCTGCCAGACTTCTCCTCAGCTGTTCCC TATCATGGATTTATCCTCATGTTTTTGAAGAACCTGTAATAGAAAACATCAGAAATTGGGTGATGGATGATAATGCTAGAGTGTCTGCCGAAGACCAAAG TATGAAGCATCATCCGAGAAAAACGGAGGTCTCTGATTCTGAAATGTTGAAAACATATTCTACTGGCCTCCTAGCTGTGTGTTTGATTGGTGGAGGTCAA GTAGTGGAAGATGTACTGACATCTGGTTTGCCAGCAAAGCTTATGCGTTATCTCCGCTTACGTGTGCTGGGAGAGACAAGTAGCACTCAGAAAGATATTG GTCATTCAACAGAGAGTAGGAATGCATCTGGGAATAATTCACTGAGAGGTAGAGATGATGGTCGCAGTAGATTTCGCCAGCTCCCAGAATCTAGTCATTT GGATGATACAAGGATGACTGATGAGAAATCTTTAGAAGACCAAATTCTTGAAAGGGGTCCAGATAGAAACATTGGTGAACAAAATTGCCAAGATAATTCT TGGGTAGGTGGTGATCCACCTGATGGGCTGGGTGAAGATGGTGATATCTGCGACGTAGATGCTGATGGGGAGGATAGATGGCACAGCAGAGATACACATG ATGGAAGGATAAAGTATGGTGAGCATGATGACAATGTTAATGACTCTTCAAGGCGACGTTCAAAATGGGGAAGATCCCGAGGGAAAGCAAGGGTCAACGA AAGTACTGTGGAAAGTGAAACTGTTTTGTTATCTCCTGGCTCTGGTAATCGATTAGGTCAGGGACGAAGTGCTCAAGATAGGAGCATATTGAGGAATGCT GGTGCCAGGAGGGTGCCTGATTCTAAAAAGACTTATGCGAGGGCCAGTACTGAGGCTTCACTTTTGGAAAGAGACGATAATGATGACTGTTTCAAAGAAT GCCAAATCGGAAGTAAAGATATTTCTGATTTTGTTCGGAAAGCTGTCCGAGCTTCTGAAGCTGAAGCTAGATCAGCCAACGCACCTGAAGAAGCTGTCAA AGCAGCAGGTGATGCTGCTGCTGATCTTGTTAAAACTGCAGCTTCAGAGGAATTTAAATCAACTAATGATGAACAAGCAGCTGTTTTGGCCGCTTCAAAA GCTGCAGAAACTGTTATTGATGCTGCATCTGCAGTTGAAGCTTCTAGGAGCTCCATTGGCATCAACTCTGAGGCAGAGAATGTGAGTTGCAGAGAAACAG ACTCTGGTGAGGATGTGGAAGATTACTTCATCCCAGATGCCCAATCACTTGCAATATTGAGGGAAAAATATTGCATTCAGTGTCTTGAATTGCTCGGAGA ATATGTAGAAGTTCTTGGCCCTGTGTTGCATGAGAAAGGGGTAGATGTTTGTCTTGCACTTCTGCAGCAGAATTCTAAAAACCAGGAAGCATCCAAGGTT GCCTTACTGTTGCCTGATGTCATGAAGCTGATCTGTGCTTTGGCAGCTCATAGGAAATTTGCTGCACTATTCGTGGACCGTGGTGGAATCCAAAAGCTCC TTGCTATCCCTAGAATGATTCAAACTTTCTTTGGCCTTTCTTCTTGTCTATTTACTATTGGTTCTCTTCAGGGGATAATGGAACGGGTTTGTGCTCTTCC ATCAGATGTTGTTTATCATGTGGTTGAGTTGGCTCTCCAACTCATTGAGTGCAACCAAGACCAAGCCCGGAAGAATGCAGCATTGTTTTTTGCTGCTGCA TTTGTCTTCAGAGCCGTTCTTGATGCTTTTGATTCCCAAGATGGATTACAGAAATTACTAGGGCTTCTAAATGATGCTGCTTTGATAAGATCTGGAGTAA ATTCTGGAGCATTGGGCTTATCTAACACAGGGTCACTTCGAAATGATCTGTCGTCTGCAGAAGTGCTGACATCATCTGAGAAGCAGGTAGCCTACCACAC CTGTGTTGCTTTGCGACAATATTTCAGAGCACATCTCCTCTTATTAGTGGATTCTATTCGTCCCAACAAAAGTAATCGTAGTGCTGCTAGGAATATTCCA AGTGTCCGGGCTGTGTACAAGCCGCTTGACATTAGTAATGAGGCTATAGATGCAGTATTCTTACAATTGCAAAAGGATCGGAAGCTTGGTCCTGCATTTG TGCGAACACGTTGGCCACCAGTTGAGAAATTCTTGGCATCCAACGGGCATATTACTATGTTGGAATTGTGTCAGGCCCCACCCGTGGAGCGATATCTTCA TGATTTGCTTCAGTATGCACTGGGTGTTCTGCACATTGTTACATTGGTGCCTAGCAGTCGTAAAATGATTGTAAATACAACATTAAGCAATAATCGTGTT GGTATAGCTGTAATTTTGGATGCAGCAAATATTGTTGGTAGTCATGTGGACCCTGAGATAATTCAGCCAGCATTAAATGTTCTAGTCAACCTTGTTTGTC CTCCACCTTCAATCAGCAATAAACCGACTGTAGTTATGCAAGCTCAACAGTTTTCTTCTGCCCAAATCACGAATGGTCCTCCTTCGGAGAGTAGAGATAG AACTGCACAAACCAGTCAGATTGAACCTAGGGAGAGGAATGGGGAAACCGGTGCTGCAACTTCAGGACTGGTTGGGGACCGCAGAATATCTCTGGGTGCA GGAGCAGGTTGTGCTGGCCTTGCTGCTCAACTGGAACAAGGATATCGCCAAGCAAGAGAGGCTGTTCGGTCTAATAATGGTATAAAGGTTCTTCTGCATC TCCTCCAACCACGTGTATATTCACCTCCTGCTGCTTTGGACTGTCTTCGTGCTTTATCATGCCGAGTCTTGCTTGGATTAGCCAGAGATGATACAATTGC ACACATCTTGACGAAGCTTCAGGTTGGGAAAAAACTATCCGAATTAATTCGGGATTCTGGTAGCCAAACACTGGGAACAGAGCAGGGTAGATGGCAAGTT GAACTTTCACAGGCTGCAATTGAGCTAATTGGGATTGTGACTAATTCGGGGCGGGCAAGTACATTAGCTGCTACAGATGCAGCTACTCCTACCTTAAGGC GCATAGAAAGGGCAGCAATAGCTGCTGCCACTCCTATCACATATCATGCAAGGGAACTTCTGCTTCTTGTTCATGAACATCTGCAGGCATCTGGATTGTC ACAAACTGCTTCATTGTTGCTTAAGGAGGCTCAGTTGACTCCTTTGCCATCATTGATTGCTCCATCTTCTCTTGTGCAACAACCTAACACACATGAAACT TCCTCAATACAAATTCACTGGCCCTCTGGTCGTGCTCCTGCTGGACTTCTCACTAACAAGTTAAAGGTTAATGCTAGTGATGAGGACACTAGCTTGAAAA TTGATACTGTCTCTGCAAAGAAAAAATCACTGACTTTTTCAGCTTCTTTTGGTACTCATTCGAGACATCAACTTTTTGATTCTCCGCAGTCATCAGGCAG AAAATGCCTTGGTACATGGAAAGAATCTTCAGAAGCTAGTATAGTGGAGAATCCTGAATCTTCAGTGAAACATAGTAGTGATGCTGTATTTAAGACTCCA ATGTTTCCAATGAAACGTAAGTTATCTGATGTGAAGGATATAGGAATACTTTCATCATCTGGAAAGCGACTAAATGTTGGGGATCAAGGACTTCGTTCTC CTATTTGTTCGAGTGCAATTCGTAAAAGCGGCCTGAAGACTGATGCTGTTGGGTTTTCTACACCAATTTCTAACCTAAGAAGTCAACAAAACCGTTGTAC AGCTGACTATGTGGATGATAATCAATACAGTAACTCAAATCTAGGTCAGATGACACCATCTTGCCAAGTTTTCAGTGACATTCAGCTTAACAACCCAGAG CGCATAACATTAGATTCTTTAGTGGTTCAGTCTCTGAAGCATCAGCATCGCCAATGCCCAGCCCCTATTACCACTCTTCCTCCACTCTCTCTTCTACACC CGCATGTTTGTCCTGAACCAAAGCAAAGCCTCGACGCCCCTTCTAATGTCACAGCTCGTCTTGGCACACGTGAATATAAGTTTATGAACGGTGGAGTTCA TGGGAACCGAAGAGATCGTCATTTTGTTTATAGCCGGTTTAGACCATGGCGCACTTGTCGGGATGATGCTGGTGACTTGTTAACATGTGTTACCTTTGTT GGGGATTCCTCTCATATTGCTGTTGGGAACCACAATGGAGAGCTCAAATTTTTTGACTCCAACAATAGCAGTGTGGTGGAGAGCTTCACAGGTCACCAGA ACCCTTTGACCCTAGTTCAGTCTTTTGTTTCTGGTGACAATCAGCTATTGCTGTCTTCAAGTTCCCAAGATGTTATGCTGTGGGATGCAACTTCAATTTT AAGTGGCCCTACCCATTCATTTGAAGGGTGCAAGGCTGCCAGGTTTAGCAATTGTGGCAAAGTTTTTGCAGCCTTGTCATCAGAATCTGCACAACGGGAA ATCCTCTTGTATGATATCCAAACATGTCAGTTAGAGTTGAAGTTGTCAGATACACCTGAAGCTTCTACAGGGAGGAGTCATGTTTATTCTTTAATTCACT TTAGCCCTTCTGACTCAATGCTGCTTTGGAATGGTGTCTTATGGGACCGACGGGTTTCTGGGCCTGTTCATCGCTTCGAACAGTTAACAGACTATGGGGG TGGAGGTTTTCATCCTGCTGGCAATGAGGTATGCAGAATCTTGCATCTCTTTAAACAATGAAATTTTACTTTTGCAAGAACTTTGTCTTAAATTGGCTGC AAGAGAAAAGTGAGAGTATAATAGTATTAATTAACATATTTTTTAGAAAACAAAGCACTTTCCTCTATTTTCTGCCTTCTTTTGTTGATAAACACCTAGG TTCTCTGTCTACTGGGTGGTTTTTTTTGAAGTTTTTATTTTTTGTTTGTACTTTTTTTTATCCAGGTTATTCTAAACTCTGAAGTCTGGGATTTGCGGAA GTTCAGACTACAACGTAGTGTACCTTCATTAGATCAAACTTCAATAACATTCAATGCATCTGGTGATGTAATGTATGCAATATTGAGGAGAAATCTTGAG GATGTAATGTCAGCAGTTCACAACACACGTCGTGGCAAGCATCCACTCTTTGCAGCTTTCCGCACATTGGATGCAATCAATTATTCGGACATTGCTACTA TCCCCGTGGATCGCTGTGTTCTTGATTTTGCTTCCGAGCCAACAGATTCATTTGTTGGGTTGGTCACTATGGATGACCAAGATGAGATGTATGCATCAGC AAGAATCTATGAAATTGGTCGCCGGAGGCCAACCGATGATGATTCTGATCCCGATGATGCGGAAAGTGAGGAGGAAGATGAGGACGATGAGGATGATGAT GATATTGACATAGATCCTCTCTTAGGCCCTGGTTTTGGCGGGGACAGCGAGAGTGATGCTGATGACACGAGTAATGATGAAGACGATGATAGTATAAGTG ACATTGGTGAAGATGGAGATTTCATATTGGATGATGTAGACTTTGATGGAGGAAATGACATGTTGGATATTGTGACAGAAGGTGATGAGGATGAGGATGA TGATGATAGTGAAGGATATGAATCTTTAAGTAGTGATGAAGAGGATTATGTGAATAATCGTAATCGCTTTGGTTATTGACTGTTAAACGCAGGCTGTAAT TATGATTTCTTTCTTTATCATAATTCATTTTTGAGCTAAAGATATATTTGTTTGGGGCTCAAAATTTTGCTGTTACCCTTTTACATTATGCCCCATGCAA TCTGACTATTATTATTGCTATGATTTTGATAGAATGTGAACCACCGCAATTGTATATGTTGTTTCAAAACCATAGTTTTTCTTCAATCTAAGTAGTAATG GGTGTCTTCAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_190358; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_431327
| Blastp | DDB1- and CUL4-associated factor homolog 1 from Arabidopsis with 54.95% of identity |
|---|---|
| Blastx | DDB1- and CUL4-associated factor homolog 1 from Arabidopsis with 54.3% of identity |
| Eggnog | Vpr (HIV-1) binding protein(ENOG410XR8C) |
| Kegg | Link to kegg annotations (AT4G31160) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415007.1) |
| Pfam | WD domain, G-beta repeat (PF00400.31) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |