| Id Trinity | TRINITY_DN52140_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_431791 |
| Sequence | TCATTGCCAAAAGCATTGAGAAAGCTAAAAGCTTGTTTGAAGAAGGTGGTGATTGGGAGAGGAAGAATCGCCTGAAAGTGTATGAGGGGTTGTACTGCAT GTCAACTCGAAATTTCAAGAAGGCTGCTGATCTGTTCTTGGATTCTATTTCTACCTTTACAACCTATGAGCTTTTCCCCTATGACACCTTTATATTTTAC ACTGTTTTGACAAGCATTATATCTTTGGATAGAGTTTCTTTGAAGCAAAAGGTATTTTATTTCTTTTGAAGCAGTCCTTTCTCTATTTTGTCATTATCCT TTCTGTTTCTTTCAAAGTGATTTGCTTATTTTATGTTATTAATTTTAGTTTATCTGCATCAGGTTGTGGATGCTCCTGAGATCTTGACAGTGATTGGCAA AGTCCCACATCTTTCTGAGTTTTTAAACTCTTTATATGATTGTCAATACAAGTCTTTCTTCACAGCATTTGATGGCTTGACGGAACAAATTAAGTTGGAT CGCTATTTACATCCACATTTCCGGTATTACATGAGGGAAATCCGAACTGTTGTTTATTCCCAGTTTTTGGAATCATATAAGAGTGTTACAATTGAGGCTA TGGCAAAAGCCTTTGGAGTAACAGTGGGTTTCATTGATGTGGAGCTATCACGTTTTATCGCAGCTGGGAAACTTCATTGCAAGATCGACAAAGTTGCCGG TGTTCTGGAAACTAACCGCCCCGATGCTAAGAATGCTCTTTACCAAGCTACTATTAAGCAAGGAGACTTCCTACTAAACCGGATCCAGAAATTATCACGA GTGATTGACCTTTGAAGTCATCTCTTATGATCCTAAATGTTACCTTTTCCCATTGGGAAAACACAGGGGATAAGGAGAATTTGAAGGGTTTCATGTTGAA TGCATTGTATTTGGTGGATATGGCATTTCTATAGTCTATTTGATTTCCAAATTAAGGAACTCTCAAGCTTGGTGAATCCAAGATGTGTCAATTCAATTTC TAACTAGTTTAAAACAGATTAGATAACTAGTATTTTTTGTTTGACAATATACTTGTGTTTAAATCAGTGTTATTAAACTCGGACCGGTCATCGACTCGGT CACACTATTGGGTCAATGGGTCACTGGTCGAACCAGTGAGTCATTGGTTGAACCGGTTAACTCGGTTTTCATCATATATTCATAATAATATCAATAACAA ACATTATTTTGTAGAAAGGTCTTTCAAACTATCACACAAGTAACTTCGTTATGTATGTAATTTTAATATATTACTTTTATTTAGTTAATGCAATATTAGT TGAGGTGGCACAAATAAAATATGTGGAGGTATGCACAGAACTAATAGCAGCAGAGACAATAAGGATGTAATAGTTATGTAATATATTTTACTTACA BLAST |
| Tissue | pods |
| Gene name | LI_gene_190392; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_431791
| Blastp | 26S proteasome non-ATPase regulatory subunit 6 from Oryza sativa with 90.73% of identity |
|---|---|
| Blastx | 26S proteasome non-ATPase regulatory subunit 6 from Oryza sativa with 78.89% of identity |
| Eggnog | Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 6(COG5187) |
| Kegg | Link to kegg annotations (4336206) |
| CantataDB | - |
| Mirbase | lja-MIR7524 (MI0024399) |
| Ncbi protein | Link to NCBI protein (XP_019434025.1) |
| Pfam | PCI domain (PF01399.26) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |