| Id Trinity | TRINITY_DN52161_c0_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_429179 |
| Sequence | GGACAGAACTTTATAGTGGGGCAGCAATCTGTAGTTGGTTTTTTTAATGGAAGAGAAAATGATGTTGAGGCTGTTGAACTTAGGGAGAGTGAGGAAGTAG AGGGTGAAATTCCTTTCACTAAAGGGCTCTCACGGTTCCGAGGACTTTGAATGAAGTGTTTAATGAGAGTGCAGAGTTTGAAGGTGATTTACGGTTGGAA AGGGGTCCACGGTTTAATGACAAAGTGGGTCAAAAGACACTTAATGATTCTGAGTTATTGCAGGAGAGAGAGAGACTTAATGCTTCACGTGGCTCTATGG ATGGCTTTACACGGTTCCTACGCAAGCCCACCCCTGCCTGTCCATTAATTGCTAGCTCTGCACAGGGACCCACCTCTGTTCCCACGCCTGCTGCTTTTTC TCTGCCCAAGACCATCACACGCATTCCTTCTTCCCAGGCTGTATCTCCACCATTCATTGCTGCCAGTTGTCCTTCACTAAAAAAAAAGGAGCCGTTGGGT GTTGAGTCTCCCACGCAACCACACCAGCTAGCACACGGTTTTGAGAAACCGGTACAGAAGGTGGATTTGGGAGCACACGGTTTTGAGAAACCGGTTCAAA CGGTGACTTTGGGACACACTATGCCATTTGCTTTGGACAGTCCACCTGGGCCTTTATTTTCTGCTGGATCCGGAAGTGATCAGCCCAACCTTGAGGTCAA GGTTCCTTTTCAAGGATTGGGCAATGATGGGCTGACCGAATATCACAAGCCCAAGAGGGTGACCCAACCATCTAAGAAGCTCCAGGATTACATATGGAAA GGAATATAAATAATTAGTGTTATTTGCTATTATGTTTTCTCTTCATTTCTGAATTTACTGTTGCAATTATGGGCTTCAGCTTTTGGCCCAATATGTTCAG TTGTAATCACCTACTTAAGGTGTGACTTTCCTTTTATCAATATGATGAATATTTCAGATATTTTCTTTCTTCTTCTTGCAGTTTCACTCCTAACAAATAC TTTCAAATTTCAATGATAGATTTAACAACTATGTTTCAAATTAGAGCCCGTTTGGTTTTGGCGTTACCATTGCCACACAGACCACTTTTCCCTGGATTTT ACATGCCAATCTATGTTAAGGATCCGAAATTGTTGGCAGCTTTGCAGGAAAGTCGAGAACGACATGCCCCTTATGCCGGTGCTTTCCTCCTTAAGGATGA GCCAGGGTCTGATCCTAGTGTAGTAACTGGCTCTGAGACAGATAAAAATGTATATGATTTAAAAGGAAAAGAGTTGTTTAACCGCCTTCATGAAGTTGGG ACTCTTGCTCAAATTTCAAGCATCCATGGGGATCAGGTGATCCTGATTGGTCATCGGCGTCTGCGCATAACAGAGATGGTTAGTGAGGATCCACTTACTG TAAAAGTTGATCATCTTAAGGACAACGCGTTTAACAGAGATGATGACATTATAAAGGCCACATATTGTGAGGTTATATCAACCCTAAGGGATGTTCTTAA AACAAGTTCCCTTTGGAGAGATCATGTTCAGACCTACACTAAGCATATTGGTGATTTTACCATTCCAAGGCTTGCAGATTTTGGAGCTGCAATATCTGGG GCAAACAAACTGCAATTACAACAAGTCCTTGAAGAGCTAGATGTGAGTACATTTTGGTCGCTAGCAATGAGAAGCCCTTACTGAACGTAGCACAGTGTGC AGACTATGCTTTCCATTAATAACTTTCAATTTCCTGGGCCAACTTTTTCGTAAATTTGACGTTCTTTGTTATTATTGAATTAACATATAAAGAATTTTTT CATCCCTGTCAAACATATAAAGAGATGAACATAAGGAACATGAATTTTTATGTTTGGGGTGTTATTTGTTAACTTTGTTGAGCAGGTGTATAATCGATTA AAACTTACATTGGAGTTGGTAAAGAAAGAGATGGAGATCAGCAAGATTCAGGAATCAATTGCAAAAGCAATTGAAGAAAAAATAAGTGGTGAGCAGCGCC GTTATTTGTTAAATGAGCAGCTTAAGGCCATAAAGAAGGAATTAGGACTGGAGACTGATGACAAAACTGCTCTCACTGGTTGGTTCTGATCTACGATAGT CGTATATTTCTTTTTATAACTCATTTCCCAAAGGATAGATCTAATATGCATGCATGTAGGAAAGGTCGTTGTAGAACCTACAACCATGTGATTAAAGTCT GTGTTACTAAACATTGTTTACCTAACTGGTTGTTTTCTTCTTCAAATATTTTGACTACATAGTGAGCATGTAAATATTCTTTATATCATACGTTTTCTAT GTATCCAGTGGTCTGTGTTTATTGTCACATGATCGAATTTGCGTTATATAGCTTCCATCCATTAGTTCACGAAGTGAAATGGTGGTTGGGGTATTTTCTG GTGAAATTTGTCGCTATCATTACATTAACTTTACTTTTCAGGTAAGTTCAGAGAAAGAATTGAACCAAAGAGAGAGAAATGCCCGCCTCATGTTTTACAA GTTATAGATGAAGAGCTGACTAAACTGCAGCTGTTGGAGGCTAGTTCTAGTGAATTCAGTGTTACCCGTAACTACTTGGACTGGCTGACTGCACTGCCTT GGGGAGAATACAGTGATGAGAATTTTGATGTTACTCGAGCACAAATGATTCTTGATGAAGACCATTATGGATTAACGGATGTGAAGGATAGGATATTGGA ATTCATAGCTGTTGGGAAATTAAGAGGGACTTCACAAGGAAAAGTTATCTGTCTTTCTGGTCCACCTGGGGTGGGCAAAACAAGTATTGGCCGTTCAATT GCACGTGCCTTGAACCGGAAGTTCTTTAGATTCTCTGTAGGAGGATTAGCTGATGTGGCTGAAATCAAGGGTCATCGTCGAACCTATATTGGTGCTATGC CAGGGAAGATGGTACAATGCCTTAAGAACGTGGGAACAGCCAACCCTCTTGTTTTGATTGATGAAATTGACAAGTTGGGCAGAGGACATGCTGGTGATCC AGCAAGTGCTTTGTTAGAGCTTCTAGATCCGGAGCAGAATGCTAATTTTCTGGACCACTATCTGGATGTTCCCATTGATCTATCAAAGGTTCTCTTTGTT TGTACTGCAAATGTAGTGGAGATGATTCCCAATCCTCTATTGGATAGGATGGAGGTTGTTTCTATTGCTGGGTATATTACTGATGAGAAAATGCACATTG CAAGAGACTATCTGGAGAAGAGTACACGTGAAGCATGCGGAATAAAGCCTGAACAAGTGGAAGTGACCAATGCTGCTCTTCTTGCTCTAATAGAAAATTA CTGCCGAGAAGCAGGGGTACGAAATCTCCAAAAGCACATAGAGAAAATTTATCGAAAGATAGCACTACAACTTGTGAGGCAAGGGGAGACAATTGATGCT ATAATCGCTAGTTCTCAGTATATTGAACCTAAGAATGCCAAAGTAGATGTTGATGAATCAGGTCAAAATACAATTAAAAAAGAAAACTTGTTAGGGAGTA GTAATCCTGAACAAGTCGGTGGAACCTCTGAAGATGACAAGTTGCAATTAGATCTACCAGCTGAGGAATCTCTATGTCCTGACAATCAATCTACAGATAA TGAGGTTGCAAAAGAAACAGAGGAAGATAAGGAAACTGGAACAGTGACAATAGAGAAAGTCTTGATTGATAAATCAAATTTAAATGACTATGTTGGAAAG CCTGTCTTCCATGCTGATCGCATCTATGATCGGACTCCCACCGGGGTTGTTATGGGCCTTGCCTGGACTTCAATGGGTGGTTCCATTTTGTATATAGAGA CCACACTCGTTGAGGAAGGGGAGGGAAAAGGAGCACTGCATGTCACTGGTCAATTAGGAGATGTTATGAAAGAGAGTACTCAGATAGCTCACACAGTTGC CAGAGCAATACTACTGGAGAAGGAACCAGAAAATCCTTTCTTTGCAAATTCAAAGTTACACCTCCATGTTCCCACAGGGGCTACACCAAAGGATGGACCA AGTGCTGGTTGCACCATGACCACTTCACTGCTGTCCCTTGCCATGAAGAAGCCTGTAAAGAAGGATCTAGCAATGACTGGGGAAGTGACACTTACAGGGA AAATTCTTCCCATTGGCGGGGTTAAGGAGAAAACCATAGAGGCGAGAAGGAGTGAAGTCAAGACTATTGTATTCCCTTCGGCTAACCGGAGAGATTTTGA TGAGCTAGCACCTAATGTGAAGGAAGGTCTTGATGTTCATTTTGTTGATGAATACAGCCAGATATTTGATTTGGCTTTTGGTGATGAACCCTCTCAGAAT ATAGAGAAATAAGTCTGCAGGATCCTGAGATGAAACTCAATTCTTTCTTGAGCTTTTGGAAGTTTTTATTCAGCTCGAGGCAAAGTATCATTTCTTTATC AGAGTGGCCTATCCAATTGTAATAAGATGTATATTTATATGTGAAGGAATGCTAATTAATTTGTTTGTTTTCACTAACCTGGGGGAGTATTATTGTTTGC GTAGTTTGCAACAATTATATCAGGTACGAGATAGTCTTTACTGGCTGAGTTACGACCAGGTCGCTCTCCTTAAGACGTTTCGTGGTACTGCTAAAATTGT GCAAGCAGACTATCAACCACACCGTCCCCAGAATAAAACAATCCAGCTCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_190544; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_429179
| Blastp | Lon protease homolog, mitochondrial from Oryza sativa with 74.09% of identity |
|---|---|
| Blastx | Lon protease homolog, mitochondrial from Oryza sativa with 75.08% of identity |
| Eggnog | ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner (By similarity)(COG0466) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019452276.1) |
| Pfam | Holliday junction DNA helicase ruvB N-terminus (PF05496.11) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |