Ll_transcript_429181

• Id Trinity: TRINITY_DN52161_c0_g1_i13
• Name Transcript: Ll_transcript_429181
• Sequence: GTTTATAAGCTTGTTTGGTTGGGTTTCACTTAAAGCCTTTATTATTTTTTTCTTAAAAGAATGTTATTTTATTTATTAAAAAATCACTTGTGAATTGTAA TGTTTATAAGCTTGTTTGGTTGGGCTTTACTGATAACCTTTTTTTTGAAATAAGCTGAAATTTAGAACCTGTTTGTTTTACGTTCTTACCAAACATTTTT GGGAAATCACTTTTTTGAGAATCCTTAGAAAACAGGTTTTTAATCTTACAGCTTGTATGGCTATACAGTCCAAATGTTAATGTTATGTGCTTATTGTATC GAGTGTAGTAGAATCTCGTAGTATGCAAGAATCTCTCCAAATGGAGTGTTTTAGATAAGATGTTCATATCCTATTGGTGTTTGCCCCCCACCCCCCACCC ACCCATTGCTTTGATGTGATTTTGTTGGAAATGTTGGCTGTTCTTGGAGAATGACTATCTTTCTTGATTGCTTATAACATAAGTATTCTTAATATTGGTG TTTTCTCCTTTACTTTGAAACAGGTTTTGGCGTTACCATTGCCACACAGACCACTTTTCCCTGGATTTTACATGCCAATCTATGTTAAGGATCCGAAATT GTTGGCAGCTTTGCAGGAAAGTCGAGAACGACATGCCCCTTATGCCGGTGCTTTCCTCCTTAAGGATGAGCCAGGGTCTGATCCTAGTGTAGTAACTGGC TCTGAGACAGATAAAAATGTATATGATTTAAAAGGAAAAGAGTTGTTTAACCGCCTTCATGAAGTTGGGACTCTTGCTCAAATTTCAAGCATCCATGGGG ATCAGGTGATCCTGATTGGTCATCGGCGTCTGCGCATAACAGAGATGGTTAGTGAGGATCCACTTACTGTAAAAGTTGATCATCTTAAGGACAACGCGTT TAACAGAGATGATGACATTATAAAGGCCACATATTGTGAGGTTATATCAACCCTAAGGGATGTTCTTAAAACAAGTTCCCTTTGGAGAGATCATGTTCAG ACCTACACTAAGCATATTGGTGATTTTACCATTCCAAGGCTTGCAGATTTTGGAGCTGCAATATCTGGGGCAAACAAACTGCAATTACAACAAGTCCTTG AAGAGCTAGATGTGTATAATCGATTAAAACTTACATTGGAGTTGGTAAAGAAAGAGATGGAGATCAGCAAGATTCAGGAATCAATTGCAAAAGCAATTGA AGAAAAAATAAGTGGTGAGCAGCGCCGTTATTTGTTAAATGAGCAGCTTAAGGCCATAAAGAAGGTACAAAGCCCTCATGATTTGGTTACATCCGCGTGC CTTGAATTCTAGACATGTTTGTATTTTTCTCAAATCAACCAGATTTTCCACATCCGAGATTGGTTCATTACATTTCATCACATCAGAGATTGAACATATC TGTTACATTATTAGTTATTACTTCGTTCTTACCAAGTCTTGGATTTCAGAATAACTTTCATGTCCCATTAAAGGAATACTCCTAATGACCATATCTTTTT AGTGGGCTTTATCCTGAGGTGAAGAAAGTTTAGGTGTCGACCTAGGTCTTTGATCTTTCTGGTGTCATTTCCTTTATCCTAATCAGTGCAATTATATGTA TGTCATACTTTCCTGAATTTTCTACTATTCTAGTTGGTCTTAAATTTATTTTCTATTTGCAGGAATTAGGACTGGAGACTGATGACAAAACTGCTCTCAC TGGTTGGTTCTGATCTACGATAGTCGTATATTTCTTTTTATAACTCATTTCCCAAAGGATAGATCTAATATGCATGCATGTAGGAAAGGTCGTTGTAGAA CCTACAACCATGTGATTAAAGTCTGTGTTACTAAACATTGTTTACCTAACTGGTTGTTTTCTTCTTCAAATATTTTGACTACATAGTGAGCATGTAAATA TTCTTTATATCATACGTTTTCTATGTATCCAGTGGTCTGTGTTTATTGTCACATGATCGAATTTGCGTTATATAGCTTCCATCCATTAGTTCACGAAGTG AAATGGTGGTTGGGGTATTTTCTGGTGAAATTTGTCGCTATCATTACATTAACTTTACTTTTCAGGTAAGTTCAGAGAAAGAATTGAACCAAAGAGAGAG AAATGCCCGCCTCATGTTTTACAAGTTATAGATGAAGAGCTGACTAAACTGCAGCTGTTGGAGGCTAGTTCTAGTGAATTCAGTGTTACCCGTAACTACT TGGACTGGCTGACTGCACTGCCTTGGGGAGAATACAGTGATGAGAATTTTGATGTTACTCGAGCACAAATGATTCTTGATGAAGACCATTATGGATTAAC GGATGTGAAGGATAGGATATTGGAATTCATAGCTGTTGGGAAATTAAGAGGGACTTCACAAGGAAAAGTTATCTGTCTTTCTGGTCCACCTGGGGTGGGC AAAACAAGTATTGGCCGTTCAATTGCACGTGCCTTGAACCGGAAGTTCTTTAGATTCTCTGTAGGAGGATTAGCTGATGTGGCTGAAATCAAGGGTCATC GTCGAACCTATATTGGTGCTATGCCAGGGAAGATGGTACAATGCCTTAAGAACGTGGGAACAGCCAACCCTCTTGTTTTGATTGATGAAATTGACAAGTT GGGCAGAGGACATGCTGGTGATCCAGCAAGTGCTTTGTTAGAGCTTCTAGATCCGGAGCAGAATGCTAATTTTCTGGACCACTATCTGGATGTTCCCATT GATCTATCAAAGGTTCTCTTTGTTTGTACTGCAAATGTAGTGGAGATGATTCCCAATCCTCTATTGGATAGGATGGAGGTTGTTTCTATTGCTGGGTATA TTACTGATGAGAAAATGCACATTGCAAGAGACTATCTGGAGAAGAGTACACGTGAAGCATGCGGAATAAAGCCTGAACAAGTGGAAGTGACCAATGCTGC TCTTCTTGCTCTAATAGAAAATTACTGCCGAGAAGCAGGGGTACGAAATCTCCAAAAGCACATAGAGAAAATTTATCGAAAGATAGCACTACAACTTGTG AGGCAAGGGGAGACAATTGATGCTATAATCGCTAGTTCTCAGTATATTGAACCTAAGAATGCCAAAGTAGATGTTGATGAATCAGGTCAAAATACAATTA AAAAAGAAAACTTGTTAGGGAGTAGTAATCCTGAACAAGTCGGTGGAACCTCTGAAGATGACAAGTTGCAATTAGATCTACCAGCTGAGGAATCTCTATG TCCTGACAATCAATCTACAGATAATGAGGTTGCAAAAGAAACAGAGGAAGATAAGGAAACTGGAACAGTGACAATAGAGAAAGTCTTGATTGATAAATCA AATTTAAATGACTATGTTGGAAAGCCTGTCTTCCATGCTGATCGCATCTATGATCGGACTCCCACCGGGGTTGTTATGGGCCTTGCCTGGACTTCAATGG GTGGTTCCATTTTGTATATAGAGACCACACTCGTTGAGGAAGGGGAGGGAAAAGGAGCACTGCATGTCACTGGTCAATTAGGAGATGTTATGAAAGAGAG TACTCAGATAGCTCACACAGTTGCCAGAGCAATACTACTGGAGAAGGAACCAGAAAATCCTTTCTTTGCAAATTCAAAGTTACACCTCCATGTTCCCACA GGGGCTACACCAAAGGATGGACCAAGTGCTGGTTGCACCATGACCACTTCACTGCTGTCCCTTGCCATGAAGAAGCCTGTAAAGAAGGATCTAGCAATGA CTGGGGAAGTGACACTTACAGGGAAAATTCTTCCCATTGGCGGGGTTAAGGAGAAAACCATAGAGGCGAGAAGGAGTGAAGTCAAGACTATTGTATTCCC TTCGGCTAACCGGAGAGATTTTGATGAGCTAGCACCTAATGTGAAGGAAGGTCTTGATGTTCATTTTGTTGATGAATACAGCCAGATATTTGATTTGGCT TTTGGTGATGAACCCTCTCAGAATATAGAGAAATAAGTCTGCAGGATCCTGAGATGAAACTCAATTCTTTCTTGAGCTTTTGGAAGTTTTTATTCAGCTC GAGGCAAAGTATCATTTCTTTATCAGAGTGGCCTATCCAATTGTAATAAGATGTATATTTATATGTGAAGGAATGCTAATTAATTTGTTTGTTTTCACTA ACCTGGGGGAGTATTATTGTTTGCGTAGTTTGCAACAATTATATCAGGTACGAGATAGTCTTTACTGGCTGAGTTACGACCAGGTCGCTCTCCTTAAGAC GTTTCGTGGTACTGCTAAAATTGTGCAAGCAGACTATCAACCACACCGTCCCCAGAATAAAACAATCCAGCTCT
• Tissue: pods
• Gene name: LI_gene_190544;
• Additional information: details;

Expression of Ll_transcript_429181

FPKM

• PAB: 1.5
• PNAB: 4.1
• PS1: 9
• PS2: 3.9
• PS3: 6.1
• PW1: 8.2
• PW2: 5.4
• PW3: 6.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_429181

• Blastp: Lon protease homolog, mitochondrial from Oryza sativa with 74.09% of identity
• Blastx: Lon protease homolog, mitochondrial from Oryza sativa with 75.08% of identity
• Eggnog: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner (By similarity)(COG0466)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019452276.1)
• Pfam: Holliday junction DNA helicase ruvB N-terminus (PF05496.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;