Ll_transcript_429188

• Id Trinity: TRINITY_DN52161_c0_g1_i18
• Name Transcript: Ll_transcript_429188
• Sequence: GTTTATAAGCTTGTTTGGTTGGGTTTCACTTAAAGCCTTTATTATTTTTTTCTTAAAAGAATGTTATTTTATTTATTAAAAAATCACTTGTGAATTGTAA TGTTTATAAGCTTGTTTGGTTGGGCTTTACTGATAACCTTTTTTTTGAAATAAGCTGAAATTTAGAACCTGTTTGTTTTACGTTCTTACCAAACATTTTT GGGAAATCACTTTTTTGAGAATCCTTAGAAAACAGGTTTTTAATCTTACAGCTTGTATGGCTATACAGTCCAAATGTTAATGTTATGTGCTTATTGTATC GAGTGTAGTAGAATCTCGTAGTATGCAAGAATCTCTCCAAATGGAGTGTTTTAGATAAGATGTTCATATCCTATTGGTGTTTGCCCCCCACCCCCCACCC ACCCATTGCTTTGATGTGATTTTGTTGGAAATGTTGGCTGTTCTTGGAGAATGACTATCTTTCTTGATTGCTTATAACATAAGTATTCTTAATATTGGTG TTTTCTCCTTTACTTTGAAACAGGTTTTGGCGTTACCATTGCCACACAGACCACTTTTCCCTGGATTTTACATGCCAATCTATGTTAAGGATCCGAAATT GTTGGCAGCTTTGCAGGAAAGTCGAGAACGACATGCCCCTTATGCCGGTGCTTTCCTCCTTAAGGATGAGCCAGGGTCTGATCCTAGTGTAGTAACTGGC TCTGAGACAGATAAAAATGTATATGATTTAAAAGGAAAAGAGTTGTTTAACCGCCTTCATGAAGTTGGGACTCTTGCTCAAATTTCAAGCATCCATGGGG ATCAGGTGATCCTGATTGGTCATCGGCGTCTGCGCATAACAGAGATGGTTAGTGAGGATCCACTTACTGTAAAAGTTGATCATCTTAAGGACAACGCGTT TAACAGAGATGATGACATTATAAAGGCCACATATTGTGAGGTTATATCAACCCTAAGGGATGTTCTTAAAACAAGTTCCCTTTGGAGAGATCATGTTCAG ACCTACACTAAGCATATTGGTGATTTTACCATTCCAAGGCTTGCAGATTTTGGAGCTGCAATATCTGGGGCAAACAAACTGCAATTACAACAAGTCCTTG AAGAGCTAGATGTGAGTACATTTTGGTCGCTAGCAATGAGAAGCCCTTACTGAACGTAGCACAGTGTGCAGACTATGCTTTCCATTAATAACTTTCAATT TCCTGGGCCAACTTTTTCGTAAATTTGACGTTCTTTGTTATTATTGAATTAACATATAAAGAATTTTTTCATCCCTGTCAAACATATAAAGAGATGAACA TAAGGAACATGAATTTTTATGTTTGGGGTGTTATTTGTTAACTTTGTTGAGCAGGTGTATAATCGATTAAAACTTACATTGGAGTTGGTAAAGAAAGAGA TGGAGATCAGCAAGATTCAGGAATCAATTGCAAAAGCAATTGAAGAAAAAATAAGTGGTGAGCAGCGCCGTTATTTGTTAAATGAGCAGCTTAAGGCCAT AAAGAAGGAATTAGGACTGGAGACTGATGACAAAACTGCTCTCACTGGTTGGTTCTGATCTACGATAGTCGTATATTTCTTTTTATAACTCATTTCCCAA AGGATAGATCTAATATGCATGCATGTAGGAAAGGTCGTTGTAGAACCTACAACCATGTGATTAAAGTCTGTGTTACTAAACATTGTTTACCTAACTGGTT GTTTTCTTCTTCAAATATTTTGACTACATAGTGAGCATGTAAATATTCTTTATATCATACGTTTTCTATGTATCCAGTGGTCTGTGTTTATTGTCACATG ATCGAATTTGCGTTATATAGCTTCCATCCATTAGTTCACGAAGTGAAATGGTGGTTGGGGTATTTTCTGGTGAAATTTGTCGCTATCATTACATTAACTT TACTTTTCAGGTAAGTTCAGAGAAAGAATTGAACCAAAGAGAGAGAAATGCCCGCCTCATGTTTTACAAGTTATAGATGAAGAGCTGACTAAACTGCAGC TGTTGGAGGCTAGTTCTAGTGAATTCAGTGTTACCCGTAACTACTTGGACTGGCTGACTGCACTGCCTTGGGGAGAATACAGTGATGAGAATTTTGATGT TACTCGAGCACAAATGATTCTTGATGAAGACCATTATGGATTAACGGATGTGAAGGATAGGATATTGGAATTCATAGCTGTTGGGAAATTAAGAGGGACT TCACAAGGAAAAGTTATCTGTCTTTCTGGTCCACCTGGGGTGGGCAAAACAAGTATTGGCCGTTCAATTGCACGTGCCTTGAACCGGAAGTTCTTTAGAT TCTCTGTAGGAGGATTAGCTGATGTGGCTGAAATCAAGGGTCATCGTCGAACCTATATTGGTGCTATGCCAGGGAAGATGGTACAATGCCTTAAGAACGT GGGAACAGCCAACCCTCTTGTTTTGATTGATGAAATTGACAAGTTGGGCAGAGGACATGCTGGTGATCCAGCAAGTGCTTTGTTAGAGCTTCTAGATCCG GAGCAGAATGCTAATTTTCTGGACCACTATCTGGATGTTCCCATTGATCTATCAAAGGTTCTCTTTGTTTGTACTGCAAATGTAGTGGAGATGATTCCCA ATCCTCTATTGGATAGGATGGAGGTTGTTTCTATTGCTGGGTATATTACTGATGAGAAAATGCACATTGCAAGAGACTATCTGGAGAAGAGTACACGTGA AGCATGCGGAATAAAGCCTGAACAAGTGGAAGTGACCAATGCTGCTCTTCTTGCTCTAATAGAAAATTACTGCCGAGAAGCAGGGGTACGAAATCTCCAA AAGCACATAGAGAAAATTTATCGAAAGATAGCACTACAACTTGTGAGGCAAGGGGAGACAATTGATGCTATAATCGCTAGTTCTCAGTATATTGAACCTA AGAATGCCAAAGTAGATGTTGATGAATCAGGTCAAAATACAATTAAAAAAGAAAACTTGTTAGGGAGTAGTAATCCTGAACAAGTCGGTGGAACCTCTGA AGATGACAAGTTGCAATTAGATCTACCAGCTGAGGAATCTCTATGTCCTGACAATCAATCTACAGATAATGAGGTTGCAAAAGAAACAGAGGAAGATAAG GAAACTGGAACAGTGACAATAGAGAAAGTCTTGATTGATAAATCAAATTTAAATGACTATGTTGGAAAGCCTGTCTTCCATGCTGACCGCATCTATGATC GGACGCCTACCGGGGTTGTTATGGGTCTTGCCTGGACTTCAATGGGTGGTTCCACTCTGTATATAGAGACCACACTCGTTGAGGAAGGGGAAGGAAAAGG AGCATTGCATGTCACTGGTCAATTAGGAGATGTGATGAAAGAAAGTACTCAGATAGCTCACACAGTTGCCAGAGCAATACTGCTGGAGAAGGAACCAGAA AATCCCTTCTTTGCAAATTCAAAGTTACACCTCCATGTTCCTGCAGGGGCTACACCAAAGGATGGACCTAGTGCTGGCTGCACGATGACCACATCATTGT TGTCCCTTGCCATGAAGAAGCCTGTGAAGAAGGATCTAGCAATGACCGGGGAAGTGACACTTACTGGCAAAGTTCTTCCTATTGGCGGGGTTAAGGAGAA AACCATAGCCGCGAGAAGGAGTGAAGTTAAGACTATTATATTCCCTTCTGCTAACAGGAGAGATTTTGATGAACTGGCACCTAATGTCAAGGAAGGTCTT GATGTTCATTTTGTTGATGACTACAGACAGATCTTTGATTTGGCTTTTGGTGATGAACTGTCTCAGAATGTAGAGAACTAAGTCTGCAGAATCTTCATTC TTTCTTCATCCTGGACCTGAGTTTTGTACTTTATTGATTTAGTACCAATGGTTTTGGGAGTTTTTATTCATCTCTGAGGCAAAGTATCATTTTCTTTCTC AGAGTGGCTTATCTAATTGTAATAATATGTACATTTATTTGTATTTGAGGGAATGCTATTTAATATTTTATTTTTATCAAGGTGGGACTATTCATACTAA ACATTCTAATACAATAATCGGTCCATTAGTTGGGGTAGGCTACTTAAACATTCTCATATTTGCAATAAAACAATTACTTTTCAGATTAAAAAA
• Tissue: pods
• Gene name: LI_gene_190544;
• Additional information: details;

Expression of Ll_transcript_429188

FPKM

• PAB: 0.1
• PNAB: 2.4
• PS1: 2
• PS2: 3.2
• PS3: 3.9
• PW1: 3.2
• PW2: 2.3
• PW3: 1.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_429188

• Blastp: Lon protease homolog 1, mitochondrial from Arabidopsis with 76.6% of identity
• Blastx: Lon protease homolog, mitochondrial from Oryza sativa with 75.23% of identity
• Eggnog: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner (By similarity)(COG0466)
• Kegg: Link to kegg annotations (AT5G26860)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019452276.1)
• Pfam: Holliday junction DNA helicase ruvB N-terminus (PF05496.11)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;