Ll_transcript_429168

• Id Trinity: TRINITY_DN52161_c0_g1_i3
• Name Transcript: Ll_transcript_429168
• Sequence: CAAAATGGTACTTTTGGTGAGAACAAAAGGTCAGTTTGGTAAAACAGGGCATATGAGGGTCTATGAAGGGCTTTAACAAATTCGGGTACACACTGCACCT TCGTTCCCGTTTCAGCACCATCCACCGCTTTTTTAAGAACAACTTAAAATTAAAAGCCGCAATCTATTCTTTCAATTTTCTGAATCTCATTGCCGCAACC AATGTTGAAGCTTATTTTATCCTCCTCCGCCCACCGCCTTCCTCAGACGGTGGTTCCGACGCTACGACCCGCAACGCTGTCCACCTCGCCGTTGCATAAA GTGCTAGGTTCTCTCAGGGGAGGCAGGTTGTTTTTCTGTTCCGGTTCGGGTGACGGAGCTGATGCCGAAGCTAAAGTTGTCGAGTCAGGCTCGGGTGTCG AAGAGTCTCAAACAAAGGCTTCTTCTGCTATCGTTTCCACTAATCCTAGGCCCGAAGATTATCTCACTGTTTTGGCGTTACCATTGCTACACAGACCACT TTTCCCTGGATTTTACATGCCAATCTATGTTAAGGATCCGAAATTGTTGGCAGCTTTGCAGGAAAGTCGAGAACGACAAGCCCCTTATGCTGGTGCTTTC CTTCTCAAGGATGAGCCAGGGTCTGATCCTAGTGTAGTAACTGGCTCTGACACAGATAAAAATGTATACGATTTAAAAGGAAAAGAGTTGTTTAACCGCC TTCATGAAGTTGGGACTCTTGCTCAAATTTCAAGCATCCATGGGGATCAGGTGATCCTGATTGGTCATCGGCGTTTACGTATAGCAGAGATGGTTAGTGA GGATCCACTTACTGTAAAAGTTGATCATCTCAAGGATAAGGCTTATAACAAAGATGATGACATGATAAAGGCCACATCTTCTGAGGTTATATCAACCCTA AGGGATGTTCTTAAAACAAGTTCCCTTTGGAGAGATCATGTTCAGACCTACACTAAGCATATTGGTGATTTTACACCCCCAAGGATTGCAGATTTTGGAG CTGCAATATCTGGGGCAAACAAATTGCAATGCCAACAAGTCCTTGAAGAGCTAGATGTGTATAATCGATTAAAACTTACACTGGAGTTGGTAAAGAAAGA GATGGAAATCAGCAAGATTCAGGAATCAATTGCAAAAGCAATTGAAGAAAAGATAAGTGGTGAGCAGCGCCGCTACTTGTTAAATGAGCAGCTTAAGGCC ATAAAGAAGGAATTGGGACTGGAGACTGATGACAAAACAGCTCTCACTGGTAAATTCAGAGAAAGGATTGAACCAAAGAGAGAAAAATGCCCGCATCATG TTTTGCAAGTTATAGATGAAGAGCTCACAAAACTGCAGCTGCTGGAGGCTAGCTCTAGTGAATTCAGTGTTACCCGTAATTACTTGGACTGGTTGACTGC TCTGCCTTGGGGAGAATACAGTGATGAGAACTTTGATGTTACTCGGGCACAAAAGATTCTTGATGAAGATCATTATGGATTAACAGATGTGAAGGATAGG ATATTGGAGTTCATAGCTGTTGGGAAATTAAGAGGGACTTCACAAGGAAAGATTATCTGTCTTTCTGGTCCGCCAGGGGTGGGAAAAACAAGTATTGGCC GTTCAATTGCACGTGCGTTGAACCGGAAGTTCTTTCGATTCTCTGTAGGAGGTTTAGCTGATGTGGCTGAAATCAAGGGTCATCGTCGAACCTATATTGG CGCTATGCCAGGTAAGATGGTACAATGCCTTAAGAATGTGGGAACAGCCAACCCTCTTGTTTTGATTGATGAAATTGACAAGGTAAGACATTGCTAGATG GTTCAGTTTGTTTGCTGCCGTGTAATTTATTTTTCCGATTTCCTGTTAAAATTTTCATAGCCCATAGTATGTGGTTGCCTTCACTCTAATAAATATAATG CATGGAATTTCTGTTTGTTAAATTCACTATTGTTTTAATCTTGTAATAAATATAATGCATAGCCCATTGTATTACTCATTTATATTATTCGTTTGGCAGT TGGGAAGAGGACATGCTGGTGATCCAGCAAGTGCTTTGTTAGAGCTTCTAGATCCGGAGCAGAATGCTAATTTTCTAGACCACTATCTTGATGTTCCCAT TGATCTATCAAAGGTTCTCTTTGTGTGTACTGCAAATGTAGTGGAAATGATACCCAATCCTCTATTGGATAGGATGGAGGTTGTTTCTATTGCTGGGTAT ATTACTGATGAGAAAATGCACATTGCAAGAGACTATCTGGAGAAGAGTACACGTGA
• Tissue: pods
• Gene name: LI_gene_190544;
• Additional information: details;

Expression of Ll_transcript_429168

FPKM

• PAB: 0
• PNAB: 0.3
• PS1: 0.2
• PS2: 1.8
• PS3: 1.1
• PW1: 0.6
• PW2: 0.9
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_429168

• Blastp: Lon protease homolog, mitochondrial from Zea with 78.25% of identity
• Blastx: Lon protease homolog, mitochondrial from Zea with 78.25% of identity
• Eggnog: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner (By similarity)(COG0466)
• Kegg: Link to kegg annotations (732810)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019428611.1)
• Pfam: ATP-dependent protease La (LON) substrate-binding domain (PF02190.15)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;