Id Trinity | TRINITY_DN52167_c1_g1_i18 |
---|---|
Name Transcript | Ll_transcript_429371 |
Sequence | ATTAGGCTTCTCTAGTAACCAAAGAATCGTAGTAATAATCGAAGTTGAGAAACCAAATCCTTGAAAGTGCGAAGTTTTCAACTTTCAACTCATCTCACTC TCTATTCAACTCTGTTCTTTTCCAAAGGTAACCCCTCTTTCCCAATTTCCCATTCTCATTAGATCTGATAAATCAATAAAACCCTAATTCATTCACATTT TCTCTTTCTCATCGCTCTTTTCGCAGCAGAACCCGATTCGTTTTGAATCGCAATGTCGAGTTTCCACGTCGGTGGCAAGGTCGTGGACAGAGTCGATTTA TTGAGGAAGAAGCAATGGTTTTGGCGCGTCGACATTACTCCTTTCGCGGTTCTCTTTGGCGTGTGGATCGTTGTGATTTGTCCTAGTCTTGATTTCGTTG ATGCCGCTGTTGTTCTCGGCGCTCTCGCTTCTCTTAATATTCTTGTTTTGCTATTTACCGGTTGGTCTGTTGACTTCAAGTGTTTTGCTCACTATAGCAA GGTTAAAAATATTGATCAGGCTGATTTTTGCAAGATAACTCCGGCGAAGTTCTGTGGTTCCAAAGAAGTTGTGCCACTTCGTTTTCGGAGAATACCTGCA GGTTCATCATCAGCGGTGGATTTGGAAGAGATTTACTTTGAGTTTAGGAAACAATGTTTTGTCTATTCAAAGGAGAAAGGGAATTTTTGCAAACTTTCTT ACCCTACCAAGGAAACGTTTGGACATTATCTCAAGAGTAGTGGTCATGGCTCAGAAGCTAAAGTTCTTGCTGCTACTGAGAAATGGGGTCGGAATGTGTT TGATTATCCTCAGCCGACATTTCAGAAATTGTTGAAAGAGCACTGCATGGAACCTTTTTTTGTATTTCAGGTTTTCTGTGTGGGTCTCTGGTGTTTGGAC GAATACTGGTATTACAGTTTGTTTACTCTATTTATGTTGTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTGAAGACCCTAACTGAGTTAAGACGTG TTAGAGTGGATAGTCAGATCCTAATGGTACATCGCTGTGGCAAGTGGGTAAAACTTTCTGGTACGGATCTTTTGCCTGGGGATGTTGTCTCTATAGGTCG TTCTTCTGGTCAGAATGGAGAGGAGAAGTCTGTACCTGCAGACATGCTTATATTGGCTGGAAGTGCAATTGTGAATGAAGCTATTCTCACAGGCGAGTCT ACTCCTCAATGGAAGGTTTCAATTGCGGCTAGGGGCATTGAGGAGAAGTTGTCAGCAAAGCGAGATAAAAGCCATGTCTTATTTGGTGGTACTAAAATAC TGCAGCACACTCCAGATAAGACCTTCCCTCTAAAAACGCCTGATGGTGGCTGCATAGCTGTTGTCCTGAGGACGGGATTTGAAACAAGCCAGGGAAAACT GATGCGAACAATCTTATTCTCTACAGAAAGGGTGACTGCTAATAGTTGGGAAAGTGGACTGTTCATTTTATTCTTGGTTGTATTTGCTCTAATCGCTGCT GGTTATGTGCTTATTAAGGGGCTAGAAGATCCCACAAGGAGCAAGTATAAACTTATACTTAGTTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGT TACCAATGGAATTGTCAATAGCTGTTAATACTTCTCTGATTGCACTGGCTCGGCGTGGAATTTTTTGTACAGAACCTTTTCGAATACCATTTGCTGGGAA GGTTGATATATGTTGTTTTGACAAGACTGGGACTCTTACATCTGATGACATGGAGTTTTCAGGAGTTGTTGATTTGATGGGAACAACAGATTTAGAATCT GATATGAGTAGAGTGCCTGTTCGAACTGTAGAAATCCTGGCTTCTTGCCATGCCTTGGTGTTTGTTGAGAATAAGCTGGTTGGTGATCCTCTTGAGAAGG CTGCGCTTAAGGGAATTGATTGGAGTTATAGATCTGATGAGAAGGCTGCTCCAAAAAAGGGAAATGGCAATCATGTCCAAATTGTTCAGCGGTACCATTT TGCATCTCATTTAAAACGAATGGCGGTTGTTGTTCGCATTCAGGAGGAATTTTTTGCCTTTGTTAAGGGTGCCCCAGAAATTGTTCAAGACAGGCTAATT GATATACCACCATCATATGTTGAAACCTACAAAAAACATACACGTCAGGGGTCTCGTGTTCTTGCTCTGGCTTACAAGTCTCTTCCTGACATGACAGTAA GAATGTTGTGGGATTTACATTGAGTTTTATGAACCTGTTTCCATCATATATTGAATTATGCACAGGGAACCGGAATGATGGTCAAAGTTTCCTGCCTTGC CATTTGAGTTTTTCAAAGAGGATAAACTTTCATTGATAGGATAATATTTTCAATATTATCATATTTTTGCCTTAATATTTCTAATCACTTGTTTTTGTGT TGTTCCTTTGACATATAGCCAAATTAATTTTCCCTTTTGTATACAACAACACAATCACATGGTCCATGTCAGAGATTTAATAAGATTTTAATTGGCTGTC AACAAACTAATACAACCTTCCTCTCTTGTTTTCCCCTGTTATTAAACATAGGCATAGTTAGTTTTCCCATTCTGTATCATTTTTTTAATAAATTTGGACC TAGGCTCTTGAGTGTAATTAAGAGGGTGAGAACTGCATTATTTTTTTTACTCTTCGCTCCTGAATGTTTAGCTTCCTTCTTCCCCTACCATTTGTTTCAT CGAGTACCACTTTGTAGTTTTTGTCCGAATTTTAACATTTGCATGTTTGCTGTTAATTGCTTGAAGGTCAGTGAAGCTAGAGGTTTGGATAGGGATTTAG TGGAGAGTGGACTTACTTTCGCTGGCTTTGTGGTATTCAATTGTCCTATTAGATCAGATTCAGCCACTGTTTTATCTGAATTGAAAGGATCTTCACATGA CTTGGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGTTCATATTATATCTAAACCTACGTTAATCCTTGGTCCAGCAAGT AATGGTGAAGGATATACTTGGATGTCCCCTGATGAAACTGAAAATATTCGCTACAGTGAGAAAGAGGTTCAGTCTTTATCCGAGACTCATGATCTTTGTG TTGGAGGTGATTGCTTTGAGATGTTGCAACAGACATCAGCTCATCTTCTGGTCATTCCTCACGTGAAGGTGTTTGCTAGAGTTGCTCCTGAGCAAAAAGA ACTTATCATGACCACTTTCAAAACTGTGGGACGGGTAACACTAATGTGTGGCGATGGAACTAATGATGTTGGAGCTTTGAAGCAGGCTGACGTAGGAGTT GCTCTTCTAAATGCTTTGCCCCCAACTCAAAGTGGGAACTCATCTGGGGAAGAAGGTTCAAAATCTGCCAAGCCAAAGAAATCTAAGCCTGCACCAGAAG CATCCGTGAAGAGCATTAGCCCAATTGGAGAAGGAACTTCAAAATCCAAAGTTGTTTCAAAATCAGATTCTACCAACTCATCTGTTAACCGTCATCAGGC GGCGGTTGACATGCAACGACAGAAACTTAAGAAGATGATGGAGGAGCTTAATGAGGAAGGAGATGGTCGCGCACCCATTGTCAAGCTCGGTGATGCCTCA ATGGCATCCCCATTCACTGCAAAACATGCATCTGTTGCTCCCACCACCGACATAATTCGTCAAGGTCGCAGTACCTTAGTGACAACCCTCCAAATGTTCA AAATTCTGGGCCTCAACTGCCTTGCTACCGCGTATGTGTTGAGTGTTATGTATCTTGATGGTGTAAAGTTAGGTGATGTGCAAGCCACAATAAGTGGTGT CTTCACTGCTGCCTTTTTCCTCTTCATCTCACATGCCCGCCCACTTCCCACTCTTTCAGCTGAACGTCCCCACCCAAATATCTTCTGTGCTTATGTATTG CTTTCCCTCTTGGGACAATTTACCATTCACCTGTTTTTTCTTATTTCATCTGTGAGAGAAGCTGAGAAGTACATGCCAGAAGAATGCATTGAACCAGATG CAAATTTTCATCCCAACTTGGTTAATACTGTTTCCTACATGGTGAGCATGATGCTTCAGGTTGCCACTTTCGCTGTAAATTACATGGGCCATCCCTTCAA CCAGAGTATTTCTGAAAACAAGCCGTTCCGGTATGCGCTCGTTGCTGCGGTTATTTTCTTCACTGCCATTACATCTGATCTCTTCAGGGACTTAAATGAC TGGTTGAAATTGGTGCCACTACCAGTGGGATTAAGGGATAAACTATTGCTTTGGGCGTTTCTAATGTTCTTGGTATGCTATTCATGGGAGAGACTACTGA GGTGGGCATTCCCGGGTAAGATCCCTTCTTGGCAGAAGCGACAACGGCTAGCTGTATCTAACTTAGAAAAGAAGAAAGAGGTCTAAGTAGTTGAAGAGAA AAACTGACAATAGGAAATGCTGTTATGACTAAATCAGAAATGGGACATGTGGTTTCTAATGTGTGAACCAATTGGCAGAGATTCATAGCATGATGAATTT TGTTGTAGGTTATTTATGAGATATTTTCTTAGGACATGAGTTTTTTATTTATTTACATGTTATGATTCATTATTACTATTAAGTAAAATGAAAATTTTGT TTAGCGACTTGGGTAGTATGAGCATCCGTTTGTTACAAAGATAAGATGCATGAAAGTACCAGAGACCTACTTCTAAATTTAGAACCAAGGTAATTAGAAT TGTTACTCCCTTCGTTGTATCAAATGTTTTAGTAGATTATGATTTTTTTAAAACATGCTTAAATTTATATTGGAACATTTCACTAAATTATACTTCTTGC TTCATCAATTGTCTTCTATTTTAGTTCGTGGGGGATATGAAGACTTCAAGTTATAAGTAATAAAC BLAST |
Tissue | pods |
Gene name | LI_gene_190599; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_429371
Blastp | Probable manganese-transporting ATPase PDR2 from Arabidopsis with 78.66% of identity |
---|---|
Blastx | Probable manganese-transporting ATPase PDR2 from Arabidopsis with 78.66% of identity |
Eggnog | P-type atpase(COG0474) |
Kegg | Link to kegg annotations (AT5G23630) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019433909.1) |
Pfam | E1-E2 ATPase (PF00122.19) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |