| Id Trinity | TRINITY_DN52181_c7_g1_i19 |
|---|---|
| Name Transcript | Ll_transcript_431585 |
| Sequence | CTAACTCCTAAGGTAATCATGTTTGTTACACATTTATAAGAAGAAAATAAATAAGAATTAAATAAAATAGATGATTGGTGCAATGTTACATTTTAGTTAT GTTATGTCTGTCTTTGGGCTGGTGGGAGAAGAAAAAACACGTTACAGCCCTGCAAGCGCCAAAAACTCTTTATTTTCCTTCCTCCTTTCCTATTCTTATT AATACGAAACAAAAAGAGAACCCTAATTCTCTTAACTTTCTCATCCTTCACAATCCTTCACAGGGACTGCAAATTTTGTGGTTCCTTTCAACAGGTTTAG AGTGACTGTACGAAATGGCATCGGTTTCTACTCAGCCTCAGTTCCGCTACACTCAGACACCATCAAAGGTGCTTCATTTGAGAAACTTGCCATGGGAGTG CACAGAGGAAGAACTGATTGAACTTGGAAAGCCTTTTGGTAAAGTTGTCAACACAAAATGCAATGTTGGAGCAAATAGAAACCAGGCCTTTATTGAATTT CAAGATTTGAATCAAGCCATTGCAATGATATCATACTATGCCTCATCGTCAGATCCTGCTCAAGTTCGAGGGAAAACTGTATATCTACAGTATTCAAATA GGCAAGAAATAGTGAATAACAAAACTGCTGCAGATGTTGCTGGGAATGTTCTGTTGGTAACAATTGAGGGTGAAGATGCACGCCTTGTCAGCATTGATGT TTTGCACTTGGTTTTTCTTTGTCAGGCAATGGAAAAACAGTTGACATGTATGTAAATGAATCAGCAGGCCCATATCAAGGCAATATCTTTGATGGCAGCT TAGTGCTTTGGGAGAAATAGCGCTTGTGTGTTCGTTTCCTTTCTCCTTTCCTTAACACTTCCTCCTTCTTCCCTATTCTCCGCTCAACTCCTACCATTCT TGTAGTTTAGGATGAAACCTTTTCTTTTCATATTTGCATCTGTATTTTTTGACTCATCTATGCATTGATGGTCACTGGATTCTATTATGTAACTCTGTTT AGTTTTTAATTTTGTTTTGCAACTTATTTTTTGTTGTGTTTTGGATTTTCCAAGTGTTATTTCAAAGTAGGCTAGCTAAACGTTTCCTTCTTCATTTGGC AATCGAATGCCGGGTTTTCACGTAATTTATGTAGATAAAGTAATTTACTTCGCTAACCCTTAGTTTGAGTCAACTATTTCTGCTGTTAATGCCAGAATTT AATGAGAATTCTATGAAATTTGTTTTGGTAGTTTCTTGATATTCCATTTATCCTGGTCTTTGTTGACAATGGTTTAGTTCTTCTGACACCAGTCTTGGTT TTGGTTGTTAATCTTTTATTTTTGTATCCATTAATGATGTTATTTATGCAAGTCATTGGCTGTTTTCCTATCTTATATGTAGAAATTATAGATTTGTTCA TATTTCTAGTTTTCTATGATATATATTAGAAAGCATCAGACAATGTTCATTTTGTGTTCAATCATTAAGATTCATCTTAGTAAATATTGTGCTGAATGTT TATTATTCACTTATGCAGGTTTTTTCAGCCTTTGGTTTTGTGCATAAGATTACCACCTTTGAGAAGACAGCAGGATTCCAGGCTCTGGTGCAATTCTCAG ATGCAGAGACTGCCACTTCTGCAAAGGATGCTTTGGATGGAAGAAGCATACCTAGGTATCTGCTCCCTGAGCATTTAGGGCCATGTACCCTTAAGATCAC ATATTCTGGACATTCGGATTTAAGTGTTAAGTTTCAAAGCCACAGGAGCAGAGATTACACTAATCCTTACCTTCCTGTTGCTCAATCAGCCATGGAGGGA AGCGGACAGTACATGGTGGGTTTGGATGGGAAAAGACTGGAGGCTGAGAGTAATGTTCTTCTTGCATCAATTGAGAACATGCAGTATGCTGTAACGTTGG ATGTCTTACACATGGTTTTCTCTTCTTTTGGGCCTATCCAAAAAATTGCAATGTTTGACAAGAATGGTGGTTTACAGGCTCTGATTCAATTTCCAGATGT TCAGACAGCTGTTACCGCCAAGGATGCTTTGGAAGGACACTGCATATATGATGGAGGGTTTTGCAAGCTTCACATCTCATATTCGCGCCATACTGATCTT AGTATAAAGGTCAACAATGATAGGAGCAGAGACTATACCATTCCTCTCACACCTGTTGTAAACGTCCAACCATCAATTTTAGGGCAACAGCCTGTTCACA ATCCCATGATGGGTCCTCCAGCTCAACAGCAATACAATCCATACCCTCCAATTTCCGAGCAGGGTCTGATGCCTCAATCTCAGCCTGGATGGGGAGCAGC TCCATCAGGACCACCACAGTCTATGCCAATGCAGATGCATAACAATGTTTACATGCCGCCTGGAACTATGGCGCCTGGAATGCCATTTCCAAGTCACGCC GCACAACAACCCGCATCGGCAATGTCCCCATATGGACCTGGTCGCAATCAATAGCATGCATCTTTTATATCTCAAATGGATGAACATTTGTTAAATCAGT TCAGCAGGTTATGCTGAAGTGAAACTTACCGTTTAAATTTGGGTACCCATCTGGTGAAACTGGCCATTTAAATAGATTTTGAATGTGAAAAGTATGAGCA ATTGTTCAGGAACTTTTAGTTGGCGCCTGACTTTGAAACAAACTGTTCAATTTTGTTCTACTTTTGTTATTGAGACTTGAGATGTTCAGTTTTAGTTAAT AGTTTAAACTTTTCCTTATTGATTTTTAATGATTAATAATGATAAAAGTCAGCGATTAAAAATGTCATTTTAGC BLAST |
| Tissue | pods |
| Gene name | LI_gene_190696; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_431585
| Blastp | Polypyrimidine tract-binding protein homolog 2 from Arabidopsis with 84.06% of identity |
|---|---|
| Blastx | Polypyrimidine tract-binding protein homolog 2 from Arabidopsis with 83.33% of identity |
| Eggnog | polypyrimidine tract binding protein(ENOG410XPMZ) |
| Kegg | Link to kegg annotations (AT5G53180) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415484.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |