| Id Trinity | TRINITY_DN52181_c7_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_431566 |
| Sequence | CTCTGTCTCCCTTTCTTATAATATCTATCTATTCTATATAAGACAAGAAAACCCTCATTCTGTGAACCTTTTCGAAATTCAGAATTCTTCTCAGGGACTG CAAATTTTGTGGTTCCTTTTGACAGGTTTCGGGTGATTATAAGAAATGGCATCGGTTTCTACTCAACCTCAGTTCCGTTACACTCAGCCACCATCGAAGG TGCTTCATTTGAGAAACTTGCCATGGGAGTGCACAGAGGAAGAACTGATTGAACTTGGAAAGCCTTTTGGTAAAGTTGTCAACACAAAATGCAATGTTGG AGCAAATCGAAATCAAGCCTTTATTGAATTTCAAGATTTGAATCAAGCCATTGCAATGATATCATACTATGCCTCATCGTCAGAGCCTGCTCAAGTACGA GGGAAAACTGTGTATCTGCAGTATTCAAATAGGCAAGAAATAGTGAATAACAAAACTGCTGCAGATGTTGCTGGGAATGTTCTGTTGGTAACAATTGAGG GTGAAGATGCACGCCTTGTCAGCATTGATGTTTTGCACTTGGTGAGCAATTCCATGTGTGAATTAGCTATATGCTGAAATTGTCATCATGAGGATGCTAG TCACTTAGTTTCGTGATTAGGTTTTTCTTTGTCAGGCAATGGAAAAACAGTTGACATGTATGTAAATGAATCAGCAGGCCCATATCAAGGCAATATCTTT GATGGCAGCTTAGTGCTTTGGGAGAAATAGCGCTTGTGTGTTCGTTTCCTTTCACCTTTCCTTAACACTTCCTCTTTCTTCCCTATTCTCCACTCAACTC CTACGATTCTTGTAGTTTAGGATATTGAAATTTTTTCTTTTAATTTGTGCATCTGTGCTTTGTTGACTCAACTTCGAAGCATTGGGATTATGCTTATACC ATGTGTAGATATGGTCACCTAATTCAATTCTTTACTCTATTTTTTGCTGCTAATGGTTGAGTTCTTCTGGCACTAATCATGCTTTTGTTTGTTAAACCTT AGTTTTTGTATCCATAGAATGATGTTATTTATGTAAGTCATTTATTGCTTTTCTATCTTATATGTGGAAATTATTGATTTCTTCTTATTTCCAGTTTTCT ATAATATGCCATAGAAAGCATCAGCCAGTATTCATTTTGTGTTCAATTAGTAAGATTCATCTTAGTTAATATTGTCCTGAAAGTTTATTATTCATTTATG CAGGTTTTTTCAGCCTTTGGTTTTGTGCATAAGATAACCACCTTTGAGAAGACAGCAGGATTCCAGGTTTAATGACATTGCCACCCTTAGTTGTCACTTT TTTATAATATTTTTTTAAGGGAAAAGTGCATAAAGCCCCCTTAAACTTTATGACTTTTTCAAGTAGCCACTAGCCACCATAGACTATTTTTCTTTCTAAT TACCCCTCAAACTTTATCAATTGGTGAAATTGGTCTCTATATAAATATATTGTTTAGTTACTCATAGACAACAAAAAAATCGCTACAATCAGACTTATAA TAGTAGCAATGTAACATTGCAGGTTAGCTAGCGTTGATATTCGGAGTAAACTGATCAAAACACAAAATTGACAGATAAGAAGAAAATAAGTAAATTTGAG ATTTAAAAGTGGTTAATGCAGCAATAGTGTTACATATACAAAAATAAAATAAAATAAATAATCGGGATTAGAAAAATGCAAGAGTTAAAAAATTTCATTG TTTTTAATTTAACGTTATCTTAATGCAGGGACCATTTCACCAATAGTTAAAGCTTAAGGGGTAATTAGGAGGAACAAATACTTAATGGTGTCTTGCAAAT GACATAAAGTTTAGGGTACTTTTATAGAGTTTTCCCTTTTTCTAATTATATTTGCTCAAGCTTATTATATACAACTGTTTAGGCTCTGGTGCAATTCTCA GATGAACCGACTGCCACTTCTGCAAAGGATGCTTTGGATGGAAGAAGCATACCTAGGTGACAATTGTATTACTTGTTTGACATGTTAGTTCAATTACTGT GGGTCAAATGGTGTAGAATGCAGATGTTGTGCATATGATCTCAAATTGGTGAACTGTTGAACTGTTGTATGGTCAAACAGGCTGTTATTTTTAGTAATAA ACACTTTATGGAGTTTATATACTTAGCTTTCTGCACTTGGTTCTAATTCTATGAATCGTTGAATGTTTGTGCATAATGCCAACTGGAGCTATCTTAAGTA AAAAATGTGCGAAGTTTGAATTGGCTGCATATTAGTATTTACGAAAACATTAATTAGCTCTTATGATTCAGTTCTTGCTGATGATATCCTCTTACCTGTT TTCAGGTATCTGCTCCCTGAACATGTGGGGCCATGTACCCTTAGGATCACATATTCCGGACATTCAGATTTAAGTGTTAAGTTTCAAAGCCACAGGAGCA GAGACTACACTAACCCCTACCTTCCTGTTGCTCAATCAGCCATGGAGGGAAGCGGACAGGCCATGGTGGGTTTGGATGGGAAAAGACTGGAGGCTGAAAG TAATGTTCTTCTGGCATCAATTGAGAACATGCAGTATGCTGTAACTTTGGATGTTTTACACATGGTGTTCTCTGCTTTTGGGCCTATCCAAAAAATTGCA ATGTTTGACAAGAATGGTGGTTTACAGGCTCTGATTCAATATCCAGATATTCAGACAGCTGTTGTAGCCAAGGATGCTTTAGAAGGACACTGCATATATG ACGGAGGATTTTGCAAGCTTCACATCTCATATTCACGTCATACTGATCTTAGTATAAAGGAATCAGGAGGGTAAGGTTATTTGCCTTGTAATCTAGAGAT CATAAGTTCAAATCATGGAAATACCTACATCTCCTCTTCCCGGACCCCACTAGGTTGGAGTCTTGTGTCAATAATGACAGGAGCAGAGACTATACCATTC CTCTCACTCCTGTTATAAACGTTCAACCATCAGTTTTAGGGCAACAACCTGTTCAAAATCCCATGATGGGCCCTCCTTCTCAGCAGCAGTACAATCCTTA CCCTCCAAATTCTGGGCAGGGTCCAATACCTCAATCTCTGGCTGGATGGGGAACACCACCACCACCACCACCACAACACTCTATGCCAATGCAGATGTAT AATAATGTTTACATGCCACCCGGAACTATGGCACCACCAATGGCCCCTGGAATGCCATATCCAAGTCAAAGCACGCCGCAACCGGCATCGACAATGTCCA CATATGGAGCTGGTCGCAGTCAATAGCATGCATCTCCCATATCTCAAATGGATCTACATATGTTAAACACATATCAGCAGAGTTCCGTTGAAGTGAAGAT TATCATTTAAATTTGGGTTCCCATCTGGTGAAACTGGCTTCATTTAAATAGATCTCTCAGCTTTGAACTTTCACGGTTGTTATTTTTAGATTTTGAATGT GAAAGTCTGAACTATTGGTCAAGAACTTTAAGTTGGCACTAGACTTTGAAACAATTACAAACTGTCCAATTTTATTTTATTTGTTGATATTTTCGGTTTT TAATCTAATATTCAATTATCCATCTAGTTTAAACCTTTGTTTTATTTGTGATTTTCACTGGCTTGCATTGGTGTTTAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_190696; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_431566
| Blastp | Polypyrimidine tract-binding protein homolog 2 from Arabidopsis with 93.23% of identity |
|---|---|
| Blastx | Polypyrimidine tract-binding protein homolog 2 from Arabidopsis with 72.47% of identity |
| Eggnog | polypyrimidine tract binding protein(ENOG410XPMZ) |
| Kegg | Link to kegg annotations (AT5G53180) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019437395.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |