Id Trinity | TRINITY_DN52189_c4_g1_i7 |
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Name Transcript | Ll_transcript_429313 |
Sequence | TGAATGAGTAGTTTAAGCATATGATAAACAATTTATGAAGAAAAGGACAATTTAGTTGCCCCCTACCTCATATATACAACCAGAACAACGTAAATATGTG TGCTGGCTCTTTTTGCCCTTTTTTTTATATTTGTTGAAAATGATAGCTATTCATCCGAAATAAACTAGCTTTTTATCTAAATAGTTAAAATTTCTTGATG GTACCAATAAAACTAGAACAACATAAATATTTGTATTTGTGCTGGCTGTTTTTCTCACCTCGTTTTCCATCAATATTACAACAACTTGAAACAAGACAAG GACTTAGTCAGTGTTGAAAATTTTACACTTCTGTTTCTGGCTTTAAAATCAATCGTTGGTCCCTTTCTTTTTCTGTATCAACAAATTTGCAAAACCAATT TTCTTTCTCAATGGGGGTTCATACTCAAACACTCTCTACCTTTGACCTTAACTCTAACCCTTCATTCCCATACTCCACCGTCAACGGCATTCACCGCCCA ACTTCCCCTCTCGCCAACGACCAGCCTCTTAAAACGTCAAATGTCGAATCGCCGGAGTGCCACGCGCCGTCACGCGCGTGGCATCAGGATACCGCTGCCG TCAGGGTGCAGAAGGTGTACCGCAGTTACCGTACCCGGCGGAGGTTGGCTGATTCCGCCGTCGTCGCCGAGGAGTTATGGTGGCAAGCGATAGATTTTGT GAGGCTAAACCGTAGCACCATTTCCTTCTTCAATTTGCCGGAAACCGCTGCGTCACGCTGGGCTCGTGTTATACTCAACGCTTCCAAGGTGGGTAAGGGT TTGTCTGTTGACGCCAAAGCACAAAAGTTGGCTTTTCAACATTGGATTGAAGCTATTGATCCACGCCACCGCTACGGGCATAACCTGCATTACTACTATG AGGAATGGTGTAAAACGGATGCTGACGAACCATTCTTTTATTGGTAAGACTAATTTACTTTAAACAAAAGCATTTTCTTCACCCCCTTTTGAAAAATTTG GGCTAAAGTTGAAGTGGATTGAGTGGGATTGGGTGTGATTTAACTTGGCAGTGCGCAAGTAAGTGAAGTTCTGTTTTCTAATGCTGTTGATACTGGCTGA TTCCATTGAATTAACAGGGAAATATGGCTTGTACAGTTTACTGTGCGCACTTGTACAGTTCAGTATCTGATTAAGTGTATATCCTTTTGCATTTGATCTG TTGATTAATGCTTCTACCCTCTAACCCATAAATGCTCCCCTGAATTTCCCAAAATTCTGTTAAAAAAAATGGATTACATATTAGGTATATACAATGGTGA TTTTTAATTTTGCTTCCTACCTCCTGTTTTAACAAAAAGTGCTGTCTGTCTTACAAGGTCAAGGCATAGAGTAAGAGTTTATGATGCTAAGATGAGAACT TGCAGCTTCTTGAAATATGTTTTCTCATTTTACAGGTTGGATTTAGGAAAAGGGAAAAATCTTGATCTTGAAAAATGCCCCCGATCAAAGCTCCGGAAAC AATGCATTAAATATCTTGGACCTCAAGAGAGAGAACACTATGAATACATTGTCTGCGAGGGAAAAATTATCCACAAGTATTCAGGAGATGTTCTCCATAC GAAGGAAGGTTCTGAAGATGCCAAGTGGATTTTTGTAATGAGCACCTCTAAGAAACTGTATGCTGGCAAGAAAAAGAAGGGATCATTCCATCATTCTTCC TTTTTAGCTGGCGGAGCTACCTTAGCTGCTGGAAGGCTGGAGGCTGAACATGGGACTCTGAAGGTAAAATTAACTTCAGAAGTTGCATGATTAAATTTGG AAAAAGGCTTCTCTAAAGTGAGAGTAAGAGTGTATGTACCCATGATTTAACTTAAAGTGCAACATGACTATACCATACTGAAGTTTAATAGTGGATACAT CCTTACTCACTTTAGAGGCAAGTTCATTTTAAAGGAGTCCTAGCCAGTAAATTGTTGTTGTAATGGTACCTAACTTTAGGTGTTCCTAATTCTACCAGCA TTAATAGTCTCAGAGATAGTGGGCTTCTGTCTTTTAGTGGATATGTGGTTACGCGGATTAAATGATATTGTTAGACATATTTTCTAATTCCAATTTATAT GTATTGACAAATGTTTGATTCTCGATGGCTTTGATTTTTCAGTCCATCTCTGCATATAGTGGACACTACCGGCCATCAGACGACTCTCTTGACAGTTTCT TATCATATCTCAAGGAAAATGGTGTCCAGCTTGATGAAGTTGAGGTAAACTGGTTACTAATGGTTAGCATCAGGACATTTCATATGCAGAATAACTCTTG TTATTATATTTCTCTGTCAACCTTGTTTCTAGAACAATTTTATGCCAAAATATGTTTCTTTTTCTTGAAGATCTTGATACTTTATGAATTGATTGGTTGC CTCTGTTGTTGATTCAATCTTTATTATAATAATTTATTTGCTTCACTTAAAAGTTTGGTCTTGCATTTCCAAATGATGTTTATGGTCATAGGCTCATAGC TGGAAGCCTGGAACATGTAATATTCAATTGAAATAACCCTGATTTTTCAGATATGCAACACAAAAGATGACACTGATATGTATGAGAATGGAAAGCTTAC TGAAAAAGATACAGCATCTGAAGTGTCAATGACTGCTAAAATGTCCGAGTCTGGATTATCCGAGGAAGCTGAGAATACCCCATCCTCAGACAAGGAAGAT CTTCAACCTCGATCCGTTGGTTGTTATCAAAGGACACTATCAGGTGGTATTCCGAGCCCAAGAGCTGAGGTTCCCAAGACTGCTATATTGCAAAGAATAA ATTCCAAGAAGGGTTCAAATTCGTACCAACTCGGGCATAACCTTTCCCGTAAATGGTCAACAGGAGCCGGACCGAGAATTGGGTGTGTTGCTGACTACCC TGTAGAGCTTAGACTACAGGCCTTGGAGATAGTAAACCTTTCTCCAAGGACCCATCCCTCCCCTTCATTGGACACGCGAATGAATGGTCTTATATCACCT ATAGCTTGTCCAACTCCCAAGGCTTCTGTTATTTGAACTACCTTACTGATCATTAGATCATGTTTCCTACCCAGTCTTGTGATGATTTAGGTTTTTTGAG TTGTAGGTGCTTTAGTTAATGTAATATTGTCCGTTCTCTATGTCATGTTAAATTTTTGGACTAGGTGTTATCTTATAAAAGACAATTGTACCTTATGCTT GTTTCCACAAATGCTAAGAGAACCTGAGAAGTGTTTGATGTGTGACTAATTATATTTCATGCCTTGTGCTAGATGGGTAAGCTTAAAATTGAGGTAGAGC TACTATTGTGTGGTTTGTGGCCGATGTAATTTGATATCACCACTGTCTTCCACACAGAAAGTGATAGCAATAAATGTTATTTTCAAAAGAGGCTGGTATA TTCAGCAAGAAACAAAATATAAATGCAG BLAST |
Tissue | pods |
Gene name | LI_gene_190740; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_429313
Blastp | IQ domain-containing protein IQM3 from Arabidopsis with 70.8% of identity |
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Blastx | IQ domain-containing protein IQM3 from Arabidopsis with 62.71% of identity |
Eggnog | NA(ENOG410XYBD) |
Kegg | Link to kegg annotations (AT3G52870) |
CantataDB | Link to cantataDB annotations (CNT0001189) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019417633.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |