Ll_transcript_304826

• Id Trinity: TRINITY_DN52212_c4_g1_i3
• Name Transcript: Ll_transcript_304826
• Sequence: CTTCCACACGCACTTTTTTATCTCTCTCGAAACCTCCATTCCATTACACTCTTCTATCAAACAACACAACACCGTTTCCCTCTCGCCCGTTCCCTTCGTG AATGGCAACAAGAAGATTATCAAATCTAACTAAATCCATTTTAGCTTCCTCGCACGCTTCTAGAACATTCCACAAACCTCTCTCTCGTTCACGCGCCGCC GCGCGTGTCTTCTCTTCATTCCCTCACCATGTCTCTGCTTCGAAGATTATCGACACCGATGTTGCCTCCGCTAAGTTCTTATCGCACTCTTTCACGCGCG GATTCCACGCTTCTAATCCCTCTTATCGATCAGCTAGTAGCGGTGCTCAGATTGCACAGACAGAGTTCACAGATATGGCATGGGAGGGCATTCTTGGTGC TGTGGATTCTGCGCGAGTTAGTAAGCAACAAATCGTGGAATCTGAGCATTTAATGAAAGCCCTCCTAGAGCAAAAGGATGGTTTGGCTAGAAGAATACTT ACTAAGGCGGGATTGGACAACACGTCCGTGCTACAGGCTACGGACAACTTTATAGCTCAGCAACCAAAGGTGACAGGTGACACCAGTGGTCCTGTGATTG GTTCACATTTTAGCTCCATCTTGGACAATTCTCGGAAGCACAAGAAAGAAATGGGCGATGATTATGTGTCTGTAGAGCATCTTTTGCTGGCATTTCCTTC AGATAAGAGGTTTGGTCAACAGTTATTTAAGAATCTTCAGCTTAGCGAGAAGGCTTTGAAAGATGCCATCCAAGCTGTCCGTGGAAGTCAAAGAGTGACT GACCAAAATCCTGAGGGGAAATATGAGGCATTGGAGAAGTATGGAAATGATCTAACTGAACTTGCTAGGCGTGGCAAGCTTGATCCTGTCATTGGTCGAG ATGATGAAATTCGGCGCTGTATCCAGATATTGTCAAGGAGAACAAAAAACAATCCAGTTATTATTGGTGAACCTGGTGTGGGGAAAACGGCAATTGCTGA AGGGTTAGCTCAACGTATAGTGCGCGGAGATGTTCCTGAACCATTGATGAACCGTAAGTTGATCTCCCTCGATATGGGTTCATTGCTAGCTGGTGCAAAG TTCCGTGGAGATTTCGAGGAAAGGTTGAAAGCTGTCCTAAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATTCACACTGTTG TAGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAATTTGTTGAAGCCAATGCTTGGACGAGGTGAACTTCGATGTATAGGTGCAACTACGCTGAA TGAGTATAGAAAATATATTGAGAAGGATCCTGCACTTGAGCGTAGATTTCAACAAGTTTTTTGCTGTCAACCATCTGTTGAAGATACAATATCCATTCTT CGTGGGTTGCGTGAGCGCTATGAGTTGCACCATGGAGTCAGAATATCAGATAGTGCACTTGTTTCAGCAGCAGTTCTTGCAGATCGATACATCACGGAAC GCTTCCTGCCTGACAAAGCCATTGATCTTGTCGATGAAGCTGCTGCAAAGCTGAAGATGGAGATTACCTCAAAGCCTACGGAATTGGATGAGATAGACAG ATCGATCTTGAAATTGGAGATGGAAAAACTGTCTCTGAAAAATGACACTGATAAGGCATCTAAAGAAAGATTAAGCAAGCTTGAAAGTGATTTGAATTTA CTCAAGCAGAAGCAAAAGGAATTAGCAGGACAATGGGACAGCGAAAAGGCTTTAATGACTCGGATAAGATCAATCAAAGAAGAGGTAGTGTTTAGTCTAT TGGACACCATTATCAAATACTTTACACTGTTTTATATGCTGGTAGAAAGTAGCTATCTGGTTATTATTTGTTACTGGGGTTGTGTGGACCTATTTTTCTT GTCCGGCACGATCTCTATTTCTCAGTGTATGCGTCTGTGTAACATATTAACCTAATTATTCCCATCATTAAATTTCTCTAACACCTTTTTTGAGCATATG TAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCTGAGCGTGATTATGACCTGAACCGTGCTGCTGAGCTTAAGTATGGAACTTTGATGTCCCTTCAGC GCCAATTGGAAGAAGCTGAAAAGAACCTAGCTGAATTCCGTAAATCCGGGCAATCTTTACTTCGAGAAGAGGTCACTGACCTTGATATTACTGAGATTGT AAGCAAATGGACTGGTATACCATTATCAAATCTCCAACAAACAGAGAGAGAAAAGTTGGTCTTTCTGGAACAGGTTCTTCATAAGAGAGTGGTTGGTCAA GATATTGCTGTAAAATCAGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTATCTGACCCAAATCGGCCAATTGCAAGCTTCATGTTCATGGGTCCAA CTGGTGTTGGCAAAACCGAGCTAGCCAAGGCTTTGGCTAGTTACTTGTTTAACACAGAAAATGCTCTTGTTAGAATTGATATGAGCGAGTACATGGAGAA ACATGCTGTTTCACGTTTAGTTGGGGCCCCTCCTGGTTATGTTGGTTATGAAGAAGGTGGTCAGCTAACTGAAGTTGTCCGGAGAAGACCTTACTCTGTC GTACTATTTGATGAGATAGAGAAGGCACATCATGATGTCTTCAACATCTTGTTACAGTTGCTGGATGATGGAAGGATTACTGATTCTCAAGGAAGGACTG TTAGCTTCACAAATTGTGTTGTGATTATGACTTCAAACATTGGCTCCCATCACATACTTGAAACCCTTCGTAGCACACAAGACGACAAAGTTGCAGTTTA TGATCAGATGAAAAGACAAGTTGTCGAGTTGGCTCGGCAAACATTCCGCCCTGAGTTCATGAATCGTATTGATGAATATATTGTTTTCCAGCCTCTGGAT TCCACACAGATCAGCAAAATAGTGGAGCTCCAGATGGAACGAGTGAAGAACAGGCTGAAGCAGAAGAAAATTGATCTTCAGTACACCCAAGAAGCTGTTG AACTTCTTGGTGTATTGGGTTTTGATCCAAATTTTGGGGCAAGACCAGTTAAAAGAGTGATACAACAATTGGTCGAAAATGAAATTGCAATGGGAGTTCT AAGGGGAGATTTCAAAGAAGAGGATTCAATCATAGTTGATGCTGATGTGACTCCATCAGCCAAGGACCCTTCTCCCCTAAACAGACTGCATATTAAGAAG CTGGACAACCCTGTTGCTGATGCCATGGTTGCCAATGACTAATTTTCCCCATTGGGTTTCTCATGAAAGCTTCACAATGGTGAGTTAAGATAACATAGTT CATACTTTTTTTGTATAGTGAATAGTTATGATAATTCCTTAGGGTATGAACTCAGTCCTTGTGTTTTATTTTAGGCCATGTTTTCCCACTTTGGGTAATA AGATTATTCTTTTAAAGGCTCTGTGAATTTGGAGTTCTCTGTTTTTTTTATATTCGGCTCTTACTCCCCTACTTTATCT
• Tissue: pods
• Gene name: LI_gene_190947;
• Additional information: details;

Expression of Ll_transcript_304826

FPKM

• PAB: 8.2
• PNAB: 6
• PS1: 2.6
• PS2: 7.6
• PS3: 4
• PW1: 1.8
• PW2: 2.5
• PW3: 3.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_304826

• Blastp: Chaperone protein ClpB3, mitochondrial from Oryza sativa with 82.39% of identity
• Blastx: Chaperone protein ClpB2, chloroplastic from Oryza sativa with 61.72% of identity
• Eggnog: ATP-dependent CLP protease ATP-binding subunit(COG0542)
• Kegg: Link to kegg annotations (4328515)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_014501091.1)
• Pfam: Clp amino terminal domain, pathogenicity island component (PF02861.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;