Id Trinity | TRINITY_DN52212_c4_g1_i4 |
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Name Transcript | Ll_transcript_304830 |
Sequence | CTTCCACACGCACTTTTTTATCTCTCTCGAAACCTCCATTCCATTACACTCTTCTATCAAACAACACAACACCGTTTCCCTCTCGCCCGTTCCCTTCGTG AATGGCAACAAGAAGATTATCAAATCTAACTAAATCCATTTTAGCTTCCTCGCACGCTTCTAGAACATTCCACAAACCTCTCTCTCGTTCACGCGCCGCC GCGCGTGTCTTCTCTTCATTCCCTCACCATGTCTCTGCTTCGAAGATTATCGACACCGATGTTGCCTCCGCTAAGTTCTTATCGCACTCTTTCACGCGCG GATTCCACGCTTCTAATCCCTCTTATCGATCAGCTAGTAGCGGTGCTCAGATTGCACAGACAGAGTTCACAGATATGGCATGGGAGGGCATTCTTGGTGC TGTGGATTCTGCGCGAGTTAGTAAGCAACAAATCGTGGAATCTGAGCATTTAATGAAAGCCCTCCTAGAGCAAAAGGATGGTTTGGCTAGAAGAATACTT ACTAAGGCGGGATTGGACAACACGTCCGTGCTACAGGCTACGGACAACTTTATAGCTCAGCAACCAAAGGTGTGTTTTCCGGTGATAGATTTATCAGTAT TTCGTAAAAAATTATCAATGCTTATTTCATTTAGCAGGTGACAGGTGACACCAGTGGTCCTGTGATTGGTTCACATTTTAGCTCCATCTTGGACAATTCT CGGAAGCACAAGAAAGAAATGGGCGATGATTATGTGTCTGTAGAGCATCTTTTGCTGGCATTTCCTTCAGATAAGAGGTTTGGTCAACAGTTATTTAAGA ATCTTCAGCTTAGCGAGAAGGCTTTGAAAGATGCCATCCAAGCTGTCCGTGGAAGTCAAAGAGTGACTGACCAAAATCCTGAGGGGAAATATGAGGCATT GGAGAAGTATGGAAATGATCTAACTGAACTTGCTAGGCGTGGCAAGCTTGATCCTGTCATTGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATATTG TCAAGGAGAACAAAAAACAATCCAGTTATTATTGGTGAACCTGGTGTGGGGAAAACGGCAATTGCTGAAGGGTTAGCTCAACGTATAGTGCGCGGAGATG TTCCTGAACCATTGATGAACCGTAAGTTGATCTCCCTCGATATGGGTTCATTGCTAGCTGGTGCAAAGTTCCGTGGAGATTTCGAGGAAAGGTTGAAAGC TGTCCTAAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATTCACACTGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGAT GCTGGGAATTTGTTGAAGCCAATGCTTGGACGAGGTGAACTTCGATGTATAGGTGCAACTACGCTGAATGAGTATAGAAAATATATTGAGAAGGATCCTG CACTTGAGCGTAGATTTCAACAAGTTTTTTGCTGTCAACCATCTGTTGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAGCGCTATGAGTTGCACCA TGGAGTCAGAATATCAGATAGTGCACTTGTTTCAGCAGCAGTTCTTGCAGATCGATACATCACGGAACGCTTCCTGCCTGACAAAGCCATTGATCTTGTC GATGAAGCTGCTGCAAAGCTGAAGATGGAGATTACCTCAAAGCCTACGGAATTGGATGAGATAGACAGATCGATCTTGAAATTGGAGATGGAAAAACTGT CTCTGAAAAATGACACTGATAAGGCATCTAAAGAAAGATTAAGCAAGCTTGAAAGTGATTTGAATTTACTCAAGCAGAAGCAAAAGGAATTAGCAGGACA ATGGGACAGCGAAAAGGCTTTAATGACTCGGATAAGATCAATCAAAGAAGAGGTAGTGTTTAGTCTATTGGACACCATTATCAAATACTTTACACTGTTT TATATGCTGGTAGAAAGTAGCTATCTGGTTATTATTTGTTACTGGGGTTGTGTGGACCTATTTTTCTTGTCCGGCACGATCTCTATTTCTCAGTGTATGC GTCTGTGTAACATATTAACCTAATTATTCCCATCATTAAATTTCTCTAACACCTTTTTTGAGCATATGTAGATTGATAGAGTCAACCTAGAGATGGAAGC TGCTGAGCGTGATTATGACCTGAACCGTGCTGCTGAGCTTAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTGGAAGAAGCTGAAAAGAACCTAGCT GAATTCCGTAAATCCGGGCAATCTTTACTTCGAGAAGAGGTCACTGACCTTGATATTACTGAGATTGTAAGCAAATGGACTGGTATACCATTATCAAATC TCCAACAAACAGAGAGAGAAAAGTTGGTCTTTCTGGAACAGGTTCTTCATAAGAGAGTGGTTGGTCAAGATATTGCTGTAAAATCAGTGGCTGATGCAAT TCGCCGTTCAAGGGCTGGATTATCTGACCCAAATCGGCCAATTGCAAGCTTCATGTTCATGGGTCCAACTGGTGTTGGCAAAACCGAGCTAGCCAAGGCT TTGGCTAGTTACTTGTTTAACACAGAAAATGCTCTTGTTAGAATTGATATGAGCGAGTACATGGAGAAACATGCTGTTTCACGTTTAGTTGGGGCCCCTC CTGGTTATGTTGGTTATGAAGAAGGTGGTCAGCTAACTGAAGTTGTCCGGAGAAGACCTTACTCTGTCGTACTATTTGATGAGATAGAGAAGGCACATCA TGATGTCTTCAACATCTTGTTACAGTTGCTGGATGATGGAAGGATTACTGATTCTCAAGGAAGGACTGTTAGCTTCACAAATTGTGTTGTGATTATGACT TCAAACATTGGCTCCCATCACATACTTGAAACCCTTCGTAGCACACAAGACGACAAAGTTGCAGTTTATGATCAGATGAAAAGACAAGTTGTCGAGTTGG CTCGGCAAACATTCCGCCCTGAGTTCATGAATCGTATTGATGAATATATTGTTTTCCAGCCTCTGGATTCCACACAGATCAGCAAAATAGTGGAGCTCCA GATGGAACGAGTGAAGAACAGGCTGAAGCAGAAGAAAATTGATCTTCAGTACACCCAAGAAGCTGTTGAACTTCTTGGTGTATTGGGTTTTGATCCAAAT TTTGGGGCAAGACCAGTTAAAAGAGTGATACAACAATTGGTCGAAAATGAAATTGCAATGGGAGTTCTAAGGGGAGATTTCAAAGAAGAGGATTCAATCA TAGTTGATGCTGATGTGACTCCATCAGCCAAGGACCCTTCTCCCCTAAACAGACTGCATATTAAGAAGCTGGACAACCCTGTTGCTGATGCCATGGTTGC CAATGACTAATTTTCCCCATTGGGTTTCTCATGAAAGCTTCACAATGGTGAGTTAAGATAACATAGTTCATACTTTTTTTGTATAGTGAATAGTTATGAT AATTCCTTAGGGTATGAACTCAGTCCTTGTGTTTTATTTTAGGCCATGTTTTCCCACTTTGGGTAATAAGATTATTCTTTTAAAGGCTCTGTGAATTTGG AGTTCTCTGTTTTTTTTATATTCGGCTCTTACTCCCCTACTTTATCT BLAST |
Tissue | pods |
Gene name | LI_gene_190947; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_304830
Blastp | Chaperone protein ClpB4, mitochondrial from Arabidopsis with 82.92% of identity |
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Blastx | Chaperone protein ClpB2, chloroplastic from Oryza sativa with 61.79% of identity |
Eggnog | ATP-dependent CLP protease ATP-binding subunit(COG0542) |
Kegg | Link to kegg annotations (AT2G25140) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_003522428.1) |
Pfam | AAA domain (Cdc48 subfamily) (PF07724.13) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |