Ll_transcript_304836

• Id Trinity: TRINITY_DN52212_c4_g1_i5
• Name Transcript: Ll_transcript_304836
• Sequence: CTTCCACACGCACTTTTTTATCTCTCTCGAAACCTCCATTCCATTACACTCTTCTATCAAACAACACAACACCGTTTCCCTCTCGCCCGTTCCCTTCGTG AATGGCAACAAGAAGATTATCAAATCTAACTAAATCCATTTTAGCTTCCTCGCACGCTTCTAGAACATTCCACAAACCTCTCTCTCGTTCACGCGCCGCC GCGCGTGTCTTCTCTTCATTCCCTCACCATGTCTCTGCTTCGAAGATTATCGACACCGATGTTGCCTCCGCTAAGTTCTTATCGCACTCTTTCACGCGCG GATTCCACGCTTCTAATCCCTCTTATCGATCAGCTAGTAGCGGTGCTCAGATTGCACAGACAGAGTTCACAGATATGGCATGGGAGGGCATTCTTGGTGC TGTGGATTCTGCGCGAGTTAGTAAGCAACAAATCGTGGAATCTGAGCATTTAATGAAAGCCCTCCTAGAGCAAAAGGATGGTTTGGCTAGAAGAATACTT ACTAAGGCGGGATTGGACAACACGTCCGTGCTACAGGCTACGGACAACTTTATAGCTCAGCAACCAAAGGTGACAGGTGACACCAGTGGTCCTGTGATTG GTTCACATTTTAGCTCCATCTTGGACAATTCTCGGAAGCACAAGAAAGAAATGGGCGATGATTATGTGTCTGTAGAGCATCTTTTGCTGGCATTTCCTTC AGATAAGAGGTTTGGTCAACAGTTATTTAAGAATCTTCAGCTTAGCGAGAAGGCTTTGAAAGATGCCATCCAAGCTGTCCGTGGAAGTCAAAGAGTGACT GACCAAAGTACAAATTTACACTCTATGATTCTTTATTTCCATGAGGAAAACATGATTTGTTCTATCTTATTATAATATTGGTGAAAATTGTTAAACTGGT ATATATGCAAGGTTCCTCTTGTTTCAATTGGCTTCATGATGTGACCCTAGAGCATGTTTGGCGTCCATTTACTTGATCCATGACAATTTCTGGTTATGAA ATAGAACCTGCATTCATGCTTGTATCATCAATTCCCGCTTCAAATATGTTTAAGCTGTTACACGAATATTTATATTCATAAAGTTAAACTGGGACTTGTT TTTATAATGTGAATGATACTTTCTATTTGCTGTTGTTAGTTTGTTGGCACTTCTCAGAAACATCTTTTTTCTCCTTTGAAAATAATTGTCTATAGATCCT GAGGGGAAATATGAGGCATTGGAGAAGTATGGAAATGATCTAACTGAACTTGCTAGGCGTGGCAAGCTTGATCCTGTCATTGGTCGAGATGATGAAATTC GGCGCTGTATCCAGATATTGTCAAGGAGAACAAAAAACAATCCAGTTATTATTGGTGAACCTGGTGTGGGGAAAACGGCAATTGCTGAAGGGTTAGCTCA ACGTATAGTGCGCGGAGATGTTCCTGAACCATTGATGAACCGTAAGTTGATCTCCCTCGATATGGGTTCATTGCTAGCTGGTGCAAAGTTCCGTGGAGAT TTCGAGGAAAGGTTGAAAGCTGTCCTAAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATTCACACTGTTGTAGGTGCAGGGG CTACAAGTGGTGCAATGGATGCTGGGAATTTGTTGAAGCCAATGCTTGGACGAGGTGAACTTCGATGTATAGGTGCAACTACGCTGAATGAGTATAGAAA ATATATTGAGAAGGATCCTGCACTTGAGCGTAGATTTCAACAAGTTTTTTGCTGTCAACCATCTGTTGAAGATACAATATCCATTCTTCGTGGGTTGCGT GAGCGCTATGAGTTGCACCATGGAGTCAGAATATCAGATAGTGCACTTGTTTCAGCAGCAGTTCTTGCAGATCGATACATCACGGAACGCTTCCTGCCTG ACAAAGCCATTGATCTTGTCGATGAAGCTGCTGCAAAGCTGAAGATGGAGATTACCTCAAAGCCTACGGAATTGGATGAGATAGACAGATCGATCTTGAA ATTGGAGATGGAAAAACTGTCTCTGAAAAATGACACTGATAAGGCATCTAAAGAAAGATTAAGCAAGCTTGAAAGTGATTTGAATTTACTCAAGCAGAAG CAAAAGGAATTAGCAGGACAATGGGACAGCGAAAAGGCTTTAATGACTCGGATAAGATCAATCAAAGAAGAGGTAGTGTTTAGTCTATTGGACACCATTA TCAAATACTTTACACTGTTTTATATGCTGGTAGAAAGTAGCTATCTGGTTATTATTTGTTACTGGGGTTGTGTGGACCTATTTTTCTTGTCCGGCACGAT CTCTATTTCTCAGTGTATGCGTCTGTGTAACATATTAACCTAATTATTCCCATCATTAAATTTCTCTAACACCTTTTTTGAGCATATGTAGATTGATAGA GTCAACCTAGAGATGGAAGCTGCTGAGCGTGATTATGACCTGAACCGTGCTGCTGAGCTTAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTGGAAG AAGCTGAAAAGAACCTAGCTGAATTCCGTAAATCCGGGCAATCTTTACTTCGAGAAGAGGTCACTGACCTTGATATTACTGAGATTGTAAGCAAATGGAC TGGTATACCATTATCAAATCTCCAACAAACAGAGAGAGAAAAGTTGGTCTTTCTGGAACAGGTTCTTCATAAGAGAGTGGTTGGTCAAGATATTGCTGTA AAATCAGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTATCTGACCCAAATCGGCCAATTGCAAGCTTCATGTTCATGGGTCCAACTGGTGTTGGCA AAACCGAGCTAGCCAAGGCTTTGGCTAGTTACTTGTTTAACACAGAAAATGCTCTTGTTAGAATTGATATGAGCGAGTACATGGAGAAACATGCTGTTTC ACGTTTAGTTGGGGCCCCTCCTGGTTATGTTGGTTATGAAGAAGGTGGTCAGCTAACTGAAGTTGTCCGGAGAAGACCTTACTCTGTCGTACTATTTGAT GAGATAGAGAAGGCACATCATGATGTCTTCAACATCTTGTTACAGTTGCTGGATGATGGAAGGATTACTGATTCTCAAGGAAGGACTGTTAGCTTCACAA ATTGTGTTGTGATTATGACTTCAAACATTGGCTCCCATCACATACTTGAAACCCTTCGTAGCACACAAGACGACAAAGTTGCAGTTTATGATCAGATGAA AAGACAAGTTGTCGAGTTGGCTCGGCAAACATTCCGCCCTGAGTTCATGAATCGTATTGATGAATATATTGTTTTCCAGCCTCTGGATTCCACACAGATC AGCAAAATAGTGGAGCTCCAGATGGAACGAGTGAAGAACAGGCTGAAGCAGAAGAAAATTGATCTTCAGTACACCCAAGAAGCTGTTGAACTTCTTGGTG TATTGGGTTTTGATCCAAATTTTGGGGCAAGACCAGTTAAAAGAGTGATACAACAATTGGTCGAAAATGAAATTGCAATGGGAGTTCTAAGGGGAGATTT CAAAGAAGAGGATTCAATCATAGTTGATGCTGATGTGACTCCATCAGCCAAGGACCCTTCTCCCCTAAACAGACTGCATATTAAGAAGCTGGACAACCCT GTTGCTGATGCCATGGTTGCCAATGACTAATTTTCCCCATTGGGTTTCTCATGAAAGCTTCACAATGGTGAGTTAAGATAACATAGTTCATACTTTTTTT GTATAGTGAATAGTTATGATAATTCCTTAGGGTATGAACTCAGTCCTTGTGTTTTATTTTAGGCCATGTTTTCCCACTTTGGGTAATAAGATTATTCTTT TAAAGGCTCTGTGAATTTGGAGTTCTCTGTTTTTTTTATATTCGGCTCTTACTCCCCTACTTTATCT
• Tissue: pods
• Gene name: LI_gene_190947;
• Additional information: details;

Expression of Ll_transcript_304836

FPKM

• PAB: 1.7
• PNAB: 0
• PS1: 0
• PS2: 0
• PS3: 0.3
• PW1: 0.1
• PW2: 0.3
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_304836

• Blastp: Chaperone protein ClpB4, mitochondrial from Arabidopsis with 82.92% of identity
• Blastx: Chaperone protein ClpB2, chloroplastic from Oryza sativa with 63.44% of identity
• Eggnog: ATP-dependent CLP protease ATP-binding subunit(COG0542)
• Kegg: Link to kegg annotations (AT2G25140)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_014501091.1)
• Pfam: AAA domain (Cdc48 subfamily) (PF07724.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;