Id Trinity | TRINITY_DN52225_c2_g1_i31 |
---|---|
Name Transcript | Ll_transcript_304647 |
Sequence | GTCCAGGCCAATAATTGAATGAAAAATCAATAAATAATAGACGCAGTCGTAACTGAGCATGAAGAGAAGATATCTCTGAGTTTTGATTGAACTCTATCGC AAACGAAACGCTGTCGTTGAATACGGAAAAAGCAAGAGAACGCTACTCATAGATCTAATCCATTCATCACCATGGATCAACACCATTCTCATCACTTCCA CCGTGCAAGGTACGCTCCTCTTTCTTCTCAACACCACCACCACCACCATCACAACCCTAACCACCTTCCTCCGCCACCGTCACTCCCTCCTCCTCCACCA CCACCCCAACAACCTCATCCCTCATCTTACCCTCCTCAGTTCCATCCTAATCATCCTGTCCATATATCGAACAGTCATAACCACCACAATCATCTTCCTC GTCGTTCTTTCTCTGATTTTGACCAATCTTCTTGGAACCCTAACCCTAGGGATGTTTCTGAGAATCGTCCTCCGCGGAATTACTCTCCGGTTGATTTTGA CCGTCAATTGCATCACCGTCCGGTGGAACGTGTGCTTCCACCGCCGCCGCCACTGCCGCAATATCAGCCGATTGATAACCGAAGGTATGATCGAGAGGAT GGGAGTTCTAGGTTGAGAATGGAGCGTATGGATGTATATGAGTCAAAACCTAGGGAGAGGGAGAGGGAAGAGTTTGTGTGGAGTCGGGGTGGTGAAGGAA ATTACCATCAAAGGGATTTTGGACCGAAATATGATTCGCCAAGTCAGAGTGTGAGGGATATGGATGTCGATTTGAAGCCTGAGGGTTATGTTCGTGTGTT TAATGTAGAAGGTGAGGTTGAAGTAACTAGGGGTGATAGAAGAGATGTTATTGGTGAAAGTAAGAGGTGGGTCAATGATAGGCAGGGACCAAGAGAATTG CGTGATTCATCGAAGAATGAGATTGGTGTGGCTGGGAATAAGAATGGTTTTCAGATAGTGTCTGGGAAAAGAGATTATTATGGAAACGAATTGGGTAGGT ACAATAGTAGAGGGAACATCAGGGAGGGTGCTCGTGAATTTACTCGCACTTCTCCGCACAAACAGATACAGAAGAAGAGTGCTCTACTTAGGCTTCAGAC GGTAAAACCGAATCATAGGAACCGCGAGAATGAGCAGTTACGCTATGCTGCTGAAATTAACTCTAGTTTCATCAGGGGTAAGGAGCAACATCAAGCTGAA AATAACTCTAATTACTTCAGGGGAAAGGAGCAATATGGTTATGGGCATGGGGTGAAAGCTGAAGAGAGGAAAGGAAGTCCTGTTGAGCTTGATATTTCCT TTGAATCAAATTCTCTGGTGGCCAAGGCTATAGTGGCACCTTCAAGTTCTGCTGTTGTTTGTGATACAAATATGAATCCAGTTTCTGACACAGATATGTG TTCTGCAGAAAAGAGGAGAAAGGTTTCGGTCTCTGACAGTGATCGTTCTGGTTTACCAACAGCAAAACTGTCTGCTGGTTCTGCAAGGTTAGGTAGCTCA CCAGGCAAAGCAAATGACACCTCTAGTTCTGCCAAGGACTTGAGCTCACAGAAGTATGTTTCTGATACTTGTTCTCCTCCATGCACCATTGTGGCCGATA ATTCATACGGTAAAAATGTGGCAACACTTCCAAATGTAACTACTAATGTTTGTGCTGAGAAACCATCCACAGTGATTGTGAAGAAGAAAAAAATTGTTAA AAGAGTAGTGAAGAAAGTTGTCAAAAATCCTAATTCAACTGTGTCACATTCACCTTCAGCAAATACACATCATGGAACTGTGCAAACAGATAGTCTCACT TTTAAATTACCAAATTCTCCTGCTCCAGACAAAATAGAAACTTCCTTGAAGGAGAAAAGTACCACTGTTGACAAGGTGTCCGTAACAGACTGTTTGCACT CTTTACCAAATGAAGGGAATGTATTGCCTGAAGATATGAAGGAAGGTTTATCCCCACTGAGTTTGGGGTCACATTCCAGGTCACAGGAATGTAAGACTGA TGGAGATTCTGATATTGGTAAATTAGCCAGGTTTGAAGGCAATGGAAATATTTCAAATTCCCCATCCCATGTTTCTTCTAGTATTGATGATAAACAAAGT GATTTTGATTGTTTAGTTGCAAATAATTCTGCCCGTGACTTGCTTAGCATACCAAATATTGACGAAGTTACTACATCATTAAATGGTATTACGTCTGAAA TCAACGACATGGTTTATGATAATAAGCAATTATGCCAGAATGAAGTGTCTCTATCACTTGTTAACTATCCAAATATAGGACGCCCACAAAATAGTTATCT CGTAGATGTAGTGGATGAAATGAATTGCAGATTGGTTTGTTCTTCTGATAATATAGTTAACACTGATCTTATAAATACATGTGATTCTGCAAATGATAGG GTTTATTGCTTGAATACCAATTATCTTACAGGTTCAGAAAAGGATCATACAGGTTCAGTAGAAAATTTTACAGTTTCTGAGTGTGGCAATGATGGCATTG TTGGTAAGGCATATTGTGAAAATAAGGCCCCCACAATCACTCAAAATGCCATTTCAGAAGAAAATCCAGATAAAGCTGTGCCAAGTAGTGGAATGATTGC TATTTTGAGTTCAGGAAACACTGAGATTGAAGAAGGTCCAAACTGCATACAACACGCTAGTGTACTGAGACAGGGTTCCGATAATGAATCAGCTAATTCA GAAGATAGTATCACTGTTCACTGTTTTAATACTGGAAAACTGGTGCCTCCCAGTGATGCCACCAAATCCCCTGAGAATTGTGACGACACAGAAGAAGCAT TGTCAAATTTGAAAATTTCTGTGGCATTTGAAGGAAATACAAATAAGATAAAAGAAAGAGAAGTTAAGACTCATTTAAATATTTTGAGTTCAAAGATGGA GGGCGTATCTACTGACCCAATAAATCCAGATAGCTATGCAACTGATGTTGATATAGCCCCAAATTTCTTGAAAAATCCAAGTCCTTCACAAGATTTAGAT CAATCAGTTCAAAGCTTAGATTTTAATTCCAAACCCAGTGCAGATGAGGTCACTGCTCTACATGGGAAACTAGAGGTTTCTGAAGCTGAATGCTACATTG AAAATAATGTCAATGATGATGCAAATAACGTTTCACAAGTTTCTAAAAGGAAAAAACTAAAAGAAGTCACTGCTGGACACCCGAGATTCAGCGATGCGAT TGTGGTCACTACATCTTCTGCAGATGTTCCCACCAGTTTCAGTGATAACCAAGCAAGTGCATTGTCAAGCATGAGTACTCTATCAATTGCCCAGTCAATA CCTTATTCAGAGGATATCACTAAATTACCTAACAATATTTTAGTTGGAGGTTCTTTTGATTCTATTGATGCAGATAGGGAAATCGTAAGTTCTGAGCATT TGGAATTACAGCACATAGACATTGCCTCTTATTCACTGTGTGAGAATGTAGCCATTGTAAATGTTCAGTTCTCGATGTTGCAAGGTGAGCCAAAGGAAAA TAGTATTCCAATTCTGCCTATAAGTAGTACTCAAACTGACACTTCAATCATTGAAAACATTGAGGGAGAAAAGACTGTTGAAGAAAATTACCAATATAGA GGCCTCGTTCAAATAGCTCCAAGTGCTGATATGGAATCTAATGATCTCAATATGGAATATAATGATCTCAACATGAACGGGGATTTACTACCTCAGCAGA ACCTCATGTCCTGTCCTACCAATGGTGATGGAGTCAACACTATTAATTCTGATGAATTGATTGAGGATGTGCCTGATGCACTATCAAATATGTGTTCTAA AGGGATAGCATCTGAAGATTATTCTAAAGTTAAAACTCAGGGTCTGAATTCATATGATTCAGAATTAAACGGGGGCAAAAATCAGGCAGGTGGTATCATT CCTAAAATTTCCCAAGGTCTTTCTTTCACCCTTTCAAAGACAAAGTCAAAGACAAAGACATCTGCCTCTTCAACCCATATATCAAAACCTCGAACTTGGC ATCGTGCATTAAATACTTCTGCTTCTCTACCTGAAATCAAGCCTTTGGTAGCAACAGTTCCTCCCAGAGGGCCAATTTTAGAAAGGAAAGGGAATTTTCA AAAGACCTCTTACATTCGTAAAGGTAATAGTCTCGTTAGGAAACCTTCTCCTTTTTCTGCTTCACCTCAAATCTCCTCTGCTAAGCAGTCAACTTCCTTT GGCTTACACGAATTACCAAAAAGCACCAGACCTGAAAGGCAAGTTGATGTGATAGGACCAATCTTGAAAGCAGGAGTGACAAATGCTCCTCAGCAGAGGC AGAGAACACCTCCAGCACCTATTAACACCATGTCAGAGGAAAATATGTCCCCCCCACTGGTTGGACCTCCTTCCAGTGTTTGCTATGATGCACCAAACTC TTGTGAAAATGCAACTAAGCATTATGAAACTCCCATTGTTCAAACTGGCCCAGCAAATAATGAGGAGAGCCAAGTTGAAGCCAATGATGAAAATTTTTCT TCTTTGAACGCGAAGAAAGTAGTATACATAAAGCCCAAAACAAATAAATTGGTTGCAACTTCGACTCCTCATGATGTTTCTGTTTCTACTGATGACAAGG CTCAAACAACCTTCTCTGATGGGTACTACAAGAGGAGCAAAAATCAGTTAGTTAGGACTACATTTGAAAGTCGTATCAACCAAACAGTTGCATTGCCTAA CAGCACTGTAAATTCTGATGGACAAGTGGCTCGTAAGGTTCTTTGCAACAGGAGATTTAGTAAGAGACGGTCACATAAGGTTGCTGGGAGCTCCTGCAAA CCTTTAAGAGCCTCATTGGTGTGGACACTTAGAGGGGGAAATTCTTCCAAAAATGACAGTGACTCACGGTATTATCGAAAGGTTTTACCTCATTTGTTTC CATGGAAAAGAGCAACATATTTAAGAGGTTTTGTTAATAATTACGCTTCAAGTTCCAACCGTAGTTCCTTATCTGCAATCAGCAAGAAATTGCTTCTATT GAGAAAGAGGGATACTGTTTACACTAGGTCGAACCATGGGTTTTCTCTTTGGAAATCCAAGGTATTGGGTGTTGGTGGGTCTAGTTTAAAATGGTCAAAA TCCATAGAGAAGCACTCGAAGCAAGCAAATGAGGAAGCCACACTCGCTGTTGCTGCGGTAGAGAGGAAAAAGAGAGAGCAGGAAGATGTGGCTTTCATTG GTTCTCAGGCAAAGAGAGAGCGCATATTTCGTATTGGTTCAGTTCGTTACAGAATGGATCCTTCCAGGCGGACACTTCAGAGGATTTCAGGTTGTCTACA TTTTTATCTAAACCATTGTACTTGGGTCTTGCATCAGTCTCTACATTTCTTAATATGTTTTGTTTGTCAAATGGATACATGTTTTTGGGACATTGGCTCC CATATTTTAGACAGTGGACACATTTTCACATATTTTAGATGAAAATTTTGCAACTTATATATGTACTGAAAATTGATATCATGGATCAACTACTAGCTTG TTGATTGTTAAACCTTCGAGTGATTGATAATGTTCTTTTGGAATAATGCCATCTCTGATCGCTTAAGGTCAAGTTTGTAGGTATGATGTTCTGTTGCCAA TTGGATACATTTTCGTATGTTTAGATATTTATCATTGATGAAGTAGGGTATTAGAGTAATGTTTTCAGGTTAGATTAGTAATCTGTAATTTATGCTTGCA ACTTAGTTTATAATGCTTCTTGCTGAATTGTGATTGTTGAACTTTTGAATGTTTTTTGGAAATGATGACTTCTTCTCCTGCCATCTAAGGACAAATTTGT AAGGTATTATGGTTTCGGAGGAAAAAATGTATTAAGATATAAAGGATATAAATTCCTCCTTTGAACAAAAAGTCATCAACTAGCAGTGCTTGTCAGTTAG CTACTTTGCTTATCAAACAAAGGATAAGAAATCATCCTTAGAACCAAACACATCAAGTTATCAACGAAGCAGTGCTTGTCAGTTGTTAGCTACTTTGTTT GTCAAACAAACAATCTTTTTGAAATAGCCATTAGGTGAGTACTATGAAGATGCTAAGAGAACCAATTTACCCCATGGGAGAGGCTGCAGCAGTACTGGCC ATTCCTTCTTTTCTCAAGCATCAAATTAAACATACATCACACACCTCCAATTTGCTTTTCCCTTTTCAGTCCAAAGCTTTCTGAATTCGTTAGTTAAATG TTTGCTCCCAGATATTGTGTGAAGAACAATCAATTCAACCATTATGATTTTTTCAGATCAATTTCTAAACATTATCCTTTTCACTGTTGCCAATGTGATG TGGAGATGCTGGAAGAAAATGCAAATGTATAATTCTTCCAACCTCCAGTTTTTCTCATCGTTGATTTTCTATACAATAGAGCAAAACTGCAAATCAATTA GTCTTTGTTTAGAGTTTTGATTTCCTGTTTAGACAAGGTTGGGGTCTGGATTTAAATTCTGAAATCATTAAGCTCCTTTCTTTTGTTGGCCATGCTAGGA CTATACTTTAGAATTATGACCTTCATTTCTTCATTTTGTTTTCTTCTTTTGCTGTTATTATATTATCTGGAAGGAGACACTAGGTGAATGTAGAGCCTTT GGACAAAGGATAAAGAATTATGGTGGTGGGGCAAAAATGTCCAAGGCAAAGTTAAGGTGAAAAGGGAATGTTATAAAACATGGTCCTTGTGTAAAAATAC AGAAAGTTGGAAAAAATACAAGACAACAAAGAAAGGCACCAAGAAAACAGTGTGTGGAGCAAGAGATAGAGCATATGATGGGTTAGACAAATCTCTAGGT ACCAGGGAGGGGAAAGCATTAGGCCTACAAAGGGTAGGGAAAGAAAGACAAGGGATTTGGAGCAAGCGAAATACATTAAAATGAAGAGGGGAAAGCCTTG ATGAAGGACAAATATATTAAGAAAAGATGGAAGAACTATTTTCACAAGCTTTTCAATGACATCCATGATTCTTTGCATTGTAATAGGCTAAACACGAACG AGAAAAATCAAAAGTACATTTTACTATGGAATTCATGATAGAGCATTATGATGTCGTTAGGTCGATGTTGCTGAGCCCACCTTGTGGGACTAAGGCTTGG TTGTTGCAATTTTCTTTTCTCCTTGCTAGTTCACAGGTTCCATCACTATGTTGGTCTTACAAAGTTTTGCTTAATGTTCTTTGTAGATGGTGAACCCCTG TCCTCTGCTTCTGTTCCTTCAGGTTTGACTGCCAAAAGAGCTTACATTCCAAGGAGATTAGTTATTGGAAATGATGAATATGTCCGAATTGGCAATGGTA ACCAGCTTATTAGAGACCCAAAGAAGAGAACTCGGAAATTGGCAAATGAAAAAGTTAGATGGAGTTTGCACACTGCCAGACAGCGGCTGACTCGGAAGCA GAAGTATTGTCAGTTTTTTACTAGATTTGGGAAATGTAACAAGGATGGTGGCAAGTGTCCTTATATTCACGATCCCACAAAAATTGCTGTCTGTACTAAG TTCCTAAATGGTTTATGTTCTACTCCCAACTGCACATTGACTCATAAGGTTTTGAGAAATATCGGGTCAAAGGAACTCAATGTGGTCTACTGCATTTACT GATCTGTCTAAACTCTAAGGTTGATTTTTGTGTGCAGGTTATCCCGGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGCTTATGCTCAAACAGAGAT TGCCCCTATAGACATGTCAATGTGAACCCTAAGGCTTCTATCTGTGAGGGATTTCTTAAGGGTTATTGTGCTGATGGGAATGAGTGTCAGAAGAAGCATA GCTATGTCTGTCCTACTTTTGAAGCAACACGAACCTGTAGTCATGGAACCAAATGCAAGCTTCACCACCCCGTAAGACAAAGTAAGGGAAAGAGAAGGAA GAGATCCGAAGATCAGAATAGCAGAAGACGTTACTTTGGTTCTAGTCCGATTCATGTTTCTGAACCTGGGATGATGGTGGCTCCAAGGCAATGTCAACCG TATGGTGTTATAGAACTTCCTGACTACATTGGCCTTGGTGTAGATGTTGACAAAGAAGTTGCAGAAAGTGTTGATCAATCATTTGAACAAGCAATGTTG BLAST |
Tissue | pods |
Gene name | LI_gene_191046; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_304647
Blastp | Zinc finger CCCH domain-containing protein 7 from Arabidopsis with 52.33% of identity |
---|---|
Blastx | Zinc finger CCCH domain-containing protein 7 from Arabidopsis with 71.09% of identity |
Eggnog | zinc finger(COG5084) |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019430460.1) |
Pfam | - |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |