| Id Trinity | TRINITY_DN52230_c1_g2_i6 |
|---|---|
| Name Transcript | Ll_transcript_306367 |
| Sequence | AAAATATGGTTTGGAAATTGGAAGGATGAGGTGAGATGGTAAATCCATTGTTCATAATTGTACTAAAAAACACCATTGTTCAAAGACACTGGATCCAGCT TTTGACACTGAAAACTCTTCTCCAAGCCTTCTACGTTCCTCACTCCCACGAATCTATAATACTCTATGCATTCATTTCATTGATCTAATCTCAAATCACA AATCTTAAACCCACCTTAATCTCCCACAACATCAAAAATCCCAATTCTGCATCAAAGTTTCAATCTTTACCTTTTTTCCCCACAACTCAATTTCACTCAA TTCCTTCATTCATCAATGTCACACGTTCTACACCAAAGACCTCTCCAAAACCCATTTTCTAACCCCTTCTCTTTCTCACCACCTTCTTCCACAAATCCCA AAAGACCCATTTCCCTTTTTACCCCTACAACCCTCCTTGCCCTTTTACTCTTCATCATTGTAGTGGGTTTCTTATGCCCTTGGGTAGGACTTATGCCCCA AAACATGATATTTTCCTCTGTTTCAAAACCTTATTCTGTTGTTTCTTCCAAATGGGGTCACTATACATTGGACAAAGCATTGAACTTTGTGGCCAAAAAT GGGACTGTGATTGTTTGTATTGTGAGCCAGCCTTACTTGCCCTTTTTGAATAACTGGTTGATTAGTGTTACTAGACAGAAGAGACAGGATATGGTTCTTG TTATAGCTGAGGATTATGCTTCTTTGGATAAGGTTAATGAGCATTGGCCTGGCCATGCTGTACTTATTCCTCCTGTGCTTGATGCTGAAAATGCTCATAA GTTTGGTTCTAAGGGTTTCTTCAACTTTACTGCCAGGAGGCCAAGCCATCTGCTGAAGATTTTGGAGCTTGGATATAATGTAATGTACAACGACGTTGAT ATGGTTTGGTTGGCTGATCCACTTGCTAAATTGGAAGGGAACCATGATGTGTACTTTTCAGATGATATGACTGCTATCAAACCATTGAACCATTCTCATG ATTTACCACCACCAGGAAAAAAGGGCCGCCCTTACATATGTAGTTGCATGATTTTCCTCCGCCCTACTGATGGAGCAAAGCTAGTTTTGAAAAAGTGGCT TGAGGAACTTCAGCTTCAGCCCTGGTCTAGAGCCAAGAAATCCAACGATCAACCGGCTTTTAACTGGGCTCTAATGAAGACTGCAAAAGAGGTTTTTACA TTGTTTTTAATTTCCTTCCAGTTTGTATAACTTTCATAAACTACAACAACAACCAAACCTTTATCGGTCGGCAACATGGATCGAACAATGTGTCGACGCC ATAATGCTCTATAGTAAATCATGTTTATGGGCAAAGCAGAGAACAATGTCAATGCAGGAAGGGGTTTTTTGTGATGCATAATGAATACATAGCCCAAAAT CCTTTTATAAATGAAATGCTAAAAATAAACTGACAAGTTTATTGACACTGGAAAATGTGCATTGCACTTTTCTTCTGTCATCCTAGCCCCCAAATGTTCT CGCGCTTCAATGGTTCCAAGATTTGTAATTATGTGCTAAAAGCTTGATCTCAAAACTGATATATAACCAGTTTTAAATGATTGAGTACATTTTCCCCAAG AGTGCGTGGATTTGTTTTTAATTCTTTAGAGCATCTGAAATTAGATTTATTCCCCCTTTTCTATGATATTTTTCCGGTGACTTCATGCAGGTGGATTTGT ACCTTCTGCCACAGGCTGCATTCCCTACAGGCGGATTATATTTCAAGAACAAGACATGGGTTAAGGAAACTAAAGGAAAGCATGTTATAATTCATAATAA CTACATCGTAGGTTTCGAGAAGAAGATAAAGCGATTTCGTGATTATGGCCTCTGGTTGGTGGATGATCATGCAGAAGAGTCTCCTCTAGGCAGATTATGA TCCTTGGTAGATTAGACAAGTTTATCATCATCAACTTTGGTCCAAGCATTTAGATTCAGAACATGCTTCCTGCTAATTGTTCATCCTTCTTGCTCGATGG ACGTAGTTGGAAGAATTATAACTCTTGCTGTCGACACATCCCATTCGTGGGATGCAGGATTGGCAAATATGATCTTTTGTTATCATTTTTGTGAAGAAAA ATGTATTTACAAATGACAGATTTTGTTTCAAGGTCCCTACAAGAAAAGGGTGGTAGATTTCCTTTGTTTCTTGATGTACAATGGTCTTCTAGAGAGGAAA AATGTGGTTCTAATGTAAGCAATACTGAATTAACATATATGAAATATATTTTGTTCAGTTCCCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_191104; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_306367
| Blastp | UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 from Arabidopsis with 70.37% of identity |
|---|---|
| Blastx | UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 from Arabidopsis with 78.73% of identity |
| Eggnog | BEST Arabidopsis thaliana protein match is RGXT1 (rhamnogalacturonan xylosyltransferase 1)(ENOG4111Z77) |
| Kegg | Link to kegg annotations (AT4G01220) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460054.1) |
| Pfam | Nucleotide-diphospho-sugar transferase (PF03407.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |