Id Trinity | TRINITY_DN52232_c0_g1_i11 |
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Name Transcript | Ll_transcript_304610 |
Sequence | ATTTTATCTTACATAAGTAATGAATTAATTTTTTTCTAGAGTATATGGTTGTTCTCCGACAAATTTTGCTAATAAAATCTTTCACTTTTTTTGTCTCTAG TGAAGTCTTATACTACTATGTCAATGTTGATCGTACAAAACATTATTAAAAGAACCTTTGATAATCATTGACCATAGTGGATTGTTTCCACATAAAGGGG TCACTGCCATTCTAGTTAAGTGCTGGCTGCATTAGCAATCTCATTAGAAGTAGAAAAATATACACAACAGTTGTGTTTAGTAGTCTTTGTCTTTTTCATT TCATGCATCCCCCCAAAATCTGTAACAATCATTGGCAAAGCTTAAGCTCTTTTCATCAATCACAATAATGGAGTTAACACCAAAGTTAACTCCAAGAGGA AGAACTCAAGGCCATGTTTTGACCTTTGATAGAGATGCAGATTCATTTGTGGATGAAGATAAGGAGCTTCAGTCAAAGTGGGCTGCAATTGAGAAATTAC CAACTTTCAAAAGGATTAAGACTTCTTTTGTTGATGTTAGGCAAGATGGTGAAGAGGGTGGAAGCACTAGCAAAGAAGCAGATGGAAAAAGGGTTGTTGA TGTTACCAAACTTGGAGCTGTGGAAAAGCGTTTGTTTATTGATAAGCTCATCAAACACATTCAGAATGATAACCTTCAGTTGCTGCAAAAACTCAGGGAA AGGATGGAAAGAGTCAATGTGAAGTTACCTACTGTGGAGGTTAAGTACAAGAACCTGCATGTAGAAGCAGAATGTGAGGTTGTTCAAGGGAAGCCACTGC CTACTCTATGGAACTCTTTTACTACCTCGTTTTCGGGTTTTGTGAAGACTATATCATGTAATACACAAGAAGCCAATGCAAGCATTCTGAAAGATGTCAG TGGCATCATAAAACCATCAAGGCTTACTCTTCTTCTTGGTCCACCTGGCTGTGGGAAAACAACCTTCTTAATGGCACTGGCTGGAAAACTAGATCAACCT CTCAAGGTTTCTGGAGAAATATCTTACAATGGTTACAAACTAGATGAATTTGTTCCTCAAAAATCATCAGCTTATATAAGCCAGTATGACCTGCATGTTC CTGAGATGACAGTAAGAGAAACAATTGACTTTTCGGCACGCTGTCAGGGGGTTGGAAGTAGAGCCGATATAATGGCTGAAATCACCAGGAAAGAAAAAGA AGCAGGAATCATCCCAGACCCAGATATTGACACCTATATGAAGGCAATTTCAGTTGAAGGACAAAGCGAAAATCTTCAAACAGAATATGTTTTAAAGATT CTCGGACTCGATATGTGTGCTGACACACTGGTTGGTGATGCATTAGAAATAGGCATTTCAGGTGGACAAAAGAAAAGATTGACTACAGGAGAGATGATTG TTGGTCCCATTAAAGCTCTTTTCATGGATGAAATATCCACTGGCTTGGACAGCTCCACAACCTTTCAAATAGTTACCTGTCTCCAGCAATTGGCGCATAT AACAGATGCAACTGCAGTGCTTTCACTCCTTCAACCGGCTCCAGAAACCTTCGAATTATTTGATGATCTTATATTGATGGCAGAGGGGAAGATAGTATAC CATGGCCCCTGCAGTCAAGCACTCCAATTTTTTAATGATTGTGGTTTCTGGTGCCCAGAAAGAAAAGGAGTAGCAGATTTTCTTCAAGAGGTAATCTCTA AGAAGGATCAAAGCCAATACTGGTACCGGATGGATGTTCCTTACAACTATGTTTCAGTGGATCAGTTCTCAGAGATCTTCAAAGAAAGTTATTGGGGTAG AATGTTAGATGATGAGGTCTCACAGCCATCTGATAAATCTCAATCCCATAAAAATGCTTTATCATTTAGCAAGTATTCCTTGGGAAAATGGGATTTGTTT AATGCTTGTATGAGGAGGGAGATTCTTCTCATGAAGCGAAACTCGTTTATATATGTTTTCAAAACTGTACAGCTCACAATCACTGCAATCATAACAATGA CGGTCTTCATACGCACTCAACTGGCTGTGGACATGATAAGTGCAAACTATTTGTTAGGTTCATTGTATTATACGCTTGTTCGCCTCATGACTAATGGAAT TGCTGAGCTGATCATGACTATTACAAGACTTCCGGTTGTTGATAAGCAGAAAACATTCTATCTTTATCCAGCATGGGCTTATTGTCTTCCAGCTTCCATT CTAAAGATTCCATTCTCAGTTCTTGATAGTATTGTGTGGACATCAGTAACATATTATGTTATAGGCTACAGCCCTGAAGCATCAAGGTTCTTCCGCCAGT TCCTTTTGCTTGTTGTTTTGCATATGTCATCAACCTCCATGTGTCGTTGTCTTGCCTCCGTTTTCAAAACTGATCTTATGGCTTCAAATGTTGGTTCGTT GGTGTTAGTACTGATGTTCTTGTTTGGAGGCTTTATTCTTCCTCGACCATCACTACCATCATGGTTGAGGTGGGGTTTTTGGCTTTCTCCTATGTCATAT GGGGAAATAGGAATAACACTAAATGAATTTCTTGCTCCTCGTTGGCAAAAGATCCAAGAGGGAGGCATCACTGTTGGAAGGAAGGTTTTAATTAGTCATG GTTTAGACTTCCATGCCAACTTCTACTGGATATCTGTTGGAGCCTTACTTGGTTTCACAGTACTTTTTGATTTTGGATTTATCTTAGCATTAACTTACAT AAATCGTAAGTCTTATCTAAGTCATTCGCAGGGAAAAAATATCAGACATTTTATTTTGCTCAATTACTGATTTGATGCTAAATGTATTCAGAGCCGAAGA TGTCTCGAGCTTTAGTTTCAAAAAAGAGGCTCTCTCGGCTGAAGGGAGGAGAAAAAGACAACAATGTGGAACTAAAATCAATTACAGTTGATATCAAGAG CACACCAAGGGGAACTCAAAGTACAGGGAAAATGGTCCTGCCCTTTGAGCCACTGACAGTAGCGTTCAAGGATGTCCAGTACTTTGTTGACACCCCTCCG GAGATGAGAAAACACGGTTCAAATGAGAAAAAACTACAATTGCTCCGAGATGTCACAGGAGCCTTTAGGCCAGGAATTCTTACTGCACTGATGGGAGTGA GTGGAGCAGGGAAGACAACTCTCATGGATGTCCTTTCAGGAAGAAAAACTGGAGGTATCATCGAAGGGGATATAAGAATTGCAGGATACCCGAAAGTGCA GAAGACATTTGAAAGAGTTTCTGGTTACTGTGAGCAGAATGACATACATTCTCCATATATAACAGTTGAAGAATCTGTCACATACTCAGCTTGGCTGCGG TTGCCAAGGGAGATTGATTCGGTCACAAAAGGGAAATTTGTGGAGGAAGTCCTTGAAACAATTGAGCTTGATGATATAAAGGATTGCCTAGTTGGGATCC CTGGCCAAAGTGGCTTATCTACCGAACAACGTAAAAGACTTACCATTGCAGTAGAGCTTGTTTCCAATCCATCAATAATCTTTATGGATGAACCAACATC AGGCTTGGATGCACGAGCAGCTGCAGTTGTTATGCGTGCAGTGAAGAATGTTGTTGGCACTGGCAGGACCACAGTTTGCACTATACATCAACCAAGCATT GACATATTTGAGACTTTTGATGAGTTGATTCTAATGAAATCTGGAGGACAGATAATTTACAGTGGTACACTAGGCTATCAATCAAGCAAACTGATAGAAT ATTTTCAGAGTATACCTGGAGTGCCAAAGATCAAAGACAATTATAATCCTGCAACATGGATGTTGGAAGCTACCTCTGCATCTATAGAAGAAGAACTTAA AGTAGATTTTGCAAAAATCTATCAGGAGTCAAATCTTTACCAGGAAACCCTTGAATTGGTGAAAGAATTAAGCCAACCATGGCCAGGTTCAAGCGACTTA CACTTTTCAACCCGATTCTCACAGAATATCGTGGGGCAGTTTATGGCATGCCTATGGAAGCAACACTTGTCCTATTGGAGAAGTCCTGAATATAACTTAT CACGTTTCATATACATGGTTGCTGCAGCAGTAATATTTAGTGCGGTATTTTGGCAGAAAGGGGATAAAATAAACAACCAACAGGATTTGTTCAATGTACT TGGATCATTGTACATTGCTGTAATATTCCTGGGTATAAATTACTGTTCAACAATTCTACCATACGTGTCAACCGAACGCAGTGTCTTGTACCGAGAAAAA TTTGCTGGAATGTATTCTTCCATGGCCTATTCATTTGCACAGGTGGCTATTGAAATACCATATATCTTATTGCAATCAATTCTGTATGTGGCTATCACAT ATCCAATGATAGGTTTCCATTGGTCAGTTGAGAAAGTGTTTTGGTACTTCTACTCCACATTCTGTACATTTTTGTACTTCGTATATCTTGGAATGCTGAT AATGTCATTGAGCATAAATCTGGATATAGCTGCTGTATTGTCAACTGCAGTCTACACAATATTCAATCTCTTTTCTGGATTCCTCATGCCAGGACCGAAA ATTCCTAAATGGTGGGTTTGGTGCTATTGGATTACACCAACAGCTTGGTCCCTGAATGGGTTGCTAACTTCACAATATGGAGACATGGACAAAGAGATAC TCATATTTGGAGAGAAAAAACAAGTTGGTACCTTCCTAAAAGATTACTATGGTTTCAGGCATGACAGATTAAGCCTTGTGGCTGTGGTGCTTATTGCTTA TCCAATTCTTTATGCATCTCTCTTTGCTTATTGCATAGGGAAAATGAATTTCCAAAAGAGATAGATACATGCAGATTCTTTCTTCTGCAGTATGGTTGGT GGCTACAATTTTCATGTATAGAAATATACAAGTACATGGCTCTCTTCTAAGATGTTAATATATTTTTGTTTTACATAATTTTTTCTTCCTTCTGTTTGAT TTATTTTTTAAGCTAGTTATATAGTGATGAAGATATGCAAGTTGTATAAGTTACAAGAGCAATAAAAATGAGACACTATTTTTTGTATTTTTGCCCATGA CTAATCCAAAGâBLAST |
Tissue | pods |
Gene name | LI_gene_191125; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_304610
Blastp | Pleiotropic drug resistance protein 3 from Nicotiana with 64.24% of identity |
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Blastx | Pleiotropic drug resistance protein 3 from Nicotiana with 64.32% of identity |
Eggnog | - |
Kegg | Link to kegg annotations (107764055) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019463336.1) |
Pfam | ABC-transporter extracellular N-terminal (PF14510.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |