Ll_transcript_307016

• Id Trinity: TRINITY_DN52248_c0_g1_i12
• Name Transcript: Ll_transcript_307016
• Sequence: TATGTACTAAATGCTAAACTGATCGTGCACATCCCTCTGCTGAGTCTGCTCTGTCTCTATTTCCTTGTCCTTATCTCTGAAAGAACCTGGGACCCAAACA CAAAATCCCGAATTTGCCCCTACCCAATTTGTCTTATAATATATATGGAAAAAATCCAACGTTACTGGCTTGAAAATATTATCATCATATATAAATAAAT AAACGAAAAACATGTTGCTTAGTTTTTGAATTGCGAACTGTTACGGCGGCGATGGAGGTCACCGGCGGAAGGAACAGACGGTGGGAGGTGGCGGCGGTGG ATCTCACAAAGGCGGCGCAGGAGAAAGGGAGTGATCCTCTGTTATGGGCGATTCAGATGTATTCGAATTTGAATTCGGCGGGAGAGTCGTTACCATCTAT TGAACTCGCTGAGTTTTTGGTTTCTTACATTTGTTGGGATAATAATGTTCCTATTCTGTGGAAGTTTCTCGATAAAGCTCTCATGCTTCAAATTGTTCCA CCTTTGCATATTCTTGCTCTTCTCTCTGTTAGGGTTCTTCCATGCAGGCATGTCCAACCTGCAGCATATAGGCTATATTTGGAATTCATCAAAAGACATG CTTTTGGTCTTAAATCTCAGACAAACAGGCCAGATTATCCGAGGGTCATGAAATCTATAGATGATGTTCTTCATCTTTCCCACATATTTGGCATGTCACA AAGTGAGCCTGGCATTCTGGTGGTTGAATTTATTTTTTCACTTGTCTGGCAACTGCTTGATGCATCGTTGGATGACGAAGGGCTGCTGGAACTTTCACTC GAGAAGAAGTCTAAGTGGGCAACACTATATCAAGAAATGGATCTGGACATGCATGATAATTATAATGATAAGAAGTCTGGACATCATGAGAAATTGAGAA ATGCAAATACCCTTATGGCTATCGAGATGATTGGGCAGTTTTTGCAGGATAAAATATCTTCAAGGATTCTTTACTTGGCTCGCCGAAATTTGCCTGCACA TTGGCTATGTTTTGTTCAGAGGTTGCAGCTGCTTGGAACAAATTCATTAACATTGAAAAAGTCAAGAGATTTAAGTCCTGAGGCACTTCTGCAACTGACT TCAGATACTTCTGTGGTCTTGTCTCGAGAATGCAAAACAAGGTCACAACAGAAGTTCCATACAGTTATGGATTTTGAATATCTTTCTTCTTCAGCATCAC TCTGCCATGGTGCAACTCACTCTGCTCTTTGGATTCCTCTTGATCTCGTGCTGGAGGATGCCATGGATGGATATGAAGCTAGTGCAACAAGTGCTATTGA AATAATAAGTGGTTTGATAAAGACTCTCCAAGCCATAAACAGAGCCTCTTGGCATGACACCTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAG AGGGAAAGAGATCCTATTGAGGGCCCAATGCCTCATCTTGATACTCGCTTATGCATGCTCTTGTGCATAATGCCTCTTGTTGTTGCTGATCTTATTGAGG AGGAGGAGGAAAGGACACCAATTGATGAAATAGAAACAGACAGTGGTCCTACAAATAACTGGAAAGAGAAGGTTCCAGGAAAGCGTCGCAGTAATTTAGT CACAAGTCTGCAGGTATTGGGCGATTATCAGAGCTTGCTCACTCCACCTCAATCTGTTGTGTCTGCTGCGAACCAGGCTGCTGCAAAAGCAACGCTCTTT GTTTCTGGCTTCTCAATAGGGAGTGCATATGTTGACTGCCTCAGCGTGAAAGAGATTCCAATTAACTGTTCTGGAAACATGCGCCATCTACTAGTTGAGG CTTGTATTGCTCGAAATCTACTCGACACATCAGCATATTTATGGCCAGGTTATATCAAGGGACATATCAATCAAATACCTCAGTGTATGCCAGCTCAAGT ACCTGGTTGGTCATCATTTATGAATGGAGCACCACTTACTTCAGAGATGGTAAATGCTCTGGCTTCAAGTCCTGCTACATGCTTAGCAGAACTGGAGAAA ATGTTTGAAATTGCAATTGGGGGATCAGAAGACGAGAAGATATCTGCTGCTGCTATTCTTTGCGGGGAATCCCTAATTAGAGGATGGAACATACAGGAGC ACACTGCTCATTTCATTCTTAGGCTATTATCTCCACCGGTTCCTCTAGAGAACACTGAAGGAAACAACCATTTGATTGATTATGCTCCAATACTTAACGT ACTCTTTGTTGGAATTGCATCTGTTGATTGTGTTCAAATATTTTCGCTTCATGGTTTGGTAAGTTCAATTCAAACCCTAATTATAAGTCTTGTCAAACAA TGTTATAATTTTTTCTCTTCATACTGAAAATTTCTATAAAATTGAAGATACTTAAAGTGATGGATGAAATAAAAACATTTGGCCTGTCATTTGAGTTTTA ATGGATGTTGAATTCAGGTTCTTAGCTTTAATTGCTGTAGGAGAAGAATAACTGTCCAATATAAATGACGTTACTCAAGTTGAGATTGTTTTGCATACAT TAGAATATAGTGTCTGTGTTGATTGGTTTGGTAATGTCCTGAATGTGGATTAGAAAATTTGTTCCACGGTTTGTTTGTGTTCAGTTTTTTCATGAATGTC GATGTAGAAGAGAAAGTGCATGACAATTACCTATCCTGCTTATGACCTGCACAGTTGTATATAACATATCATATTTTTTTATATGTAGCACATTAGTTAT TATATATGCAGTTAATAGATTATTCTGAATAAAAAAATATTAGGTTTAGGGAGATAAAGCAGGTAAAACAAGGGAGGAGTGCTAGGATCAGACTCTAACA CACTCCTATCAACACACTCCAAGCTATTGATCCACATTCCCACTTTTTAAAACATGTCACCTGATAACCTGCCTTCCCAGTTTACACATACTTCAAACTG TAACCCCCTCACTCGTTCGAAGAGCAACAATTACAGTTTGTTAGATTCACTCTAGGAACTTTATGGGCAAATAATCAATTCAACTGAACCTTCTCCAGGA GCAATAGGCGTAATTTGACTAATTTCCTCTTTAATTGCCATCCTGGCCATCACTAATAGAAAGACCAATTTTTTTTTCCAGAGCCTGGGTGTAATTCCAA ATCCTGATCATATCTTACCCAGATAAGATAACAGGAAGGCCTTGCACCTAAATCGGTGTCAATTGCACAATCCCCCTGCCTTTCAACTTGTTCAAAACCA GCTTCGAAGCCTCATATCCTTAACACAGTTGAGGGCAATTTATATTCCTAAGGGTTTTTCTTAGCTAATTCATCAAAATACTTAAGGGTTTTTCTATCAC ACAATTTCCCAATCAGCTCTTTCTCCTGTTGAACAATCTTTTCTGTCACAATGATCTCATGTTGCTCTTCGTATGAGTTTGTAGAAGATTAAGGTTTTAA GAGTGGGTGATGTGGACCAATAGCTTGGAGTGTGTTAGAGAGTATGGTCCTAGCACTCCTCAAAACAAGAAAGGAATTATGCATTCTCACTTAAATGCAT CCTTTCTATTTTCATCTCTTTTTTGTTCTATTTTACTTTTATGATAGTTTGAATTAGTGCATTTCCCAAATCTACCAACAGGTTCCGCAGCTTGCATGTT CATTGATGCCAATTTGTGAAGTTTTTGGGTCTTGTGTGCCTAATATTTCATGGACACTGACATCAGGGGTGCAAATATCTGCCCATGCTGTGTTTTCAAA TGCATTTATTCTTCTTTTAAAGCTATGGAAATTTAATCGGCCCCCTCTTGAACATGGAATTGGAGATGTACCTACTGTTGGTTCTCAGTTAACTCCTGAA TACCTACTATTAGTTCGAAACTCCCACTTAATGTCAGATGGTAACATCCACAAAGATCGAAACAGGAAGAGGCTATCTGAGATTGCAAGTTTATCATCAC CAAATTCTGTATTTGTTGACTCCTTTCCAAAATTAAAAGTCTGGTACCGGCAGCATCAAGCATGTATAGCTTCAACACTGTCCGGTCTTGTTCATGGAAC CCCTTTTCATCAAATTGTTGATGGGCTTCTTAACATGATGTTTAGAAATATTAGTAGAGGGGACCAGGTTACTATTGTATCTGGAAGCAGTAGTTCTTCT GGACCTGAAAATGAAGATACTTTTATAGGGACAAAGTTGCCTGCATGGGATATTTTGGAAGCCATTCCCTTTGTTGTTGATGCTGCTGTCACAGCCTGTG CTCATGGAAGACTGTCTCCTCGTGAGTTGGCAACAGGGCTGAAAGAATTAGCTGATTTTCTTCCTGCATCATTGGCAACTATAATAAGTTACTTCTCTGC TGAAGTAACTCGAGGTGTTTGGAAACCTGTATTTATGAATGGAACGGATTGGCCAAGCCCTGCTGCAAATCTATTGAACGTTGAGGAACAGATCAAGAAG ATTTTGGCTGCGACTGGTGTTGATGTGCCTAGCCTTGCTCCAGGAGGCAGCTCACCTGCCACACTTCCATTGCCATTGGCTGCTTTCACAAGTCTCACCA TAACCTACAAAGTTGACAGAGCATCTGAGCGTTTTCTGAATTTGGCTGGCCAAACACTGGAGTCCCTTGCTGCAGGTTGTCCATGGCCTAGCATGCCAAT TGTGGCTTCCTTGTGGACCCAAAAGGCAAAACGTTGGAGTGACTTCCTTATCTTCTCAGCTTCTAGAACAGTCTTCCTCCATAATAGGGATGCAGTTGTT CAACTTCTTAAAAGCTGTTTCACAGCTACCCTTGGCATGAATAGCTCTCCTATCTCAAGCAATGGTGGTGTTGGAGCCCTCCTTGGCCATGGATTTAAGT CCCATTTTTGTGGAGGGATGTGCCCTGTTGCTCCAGGAATTCTCTACTTACGTGTTTATCGGTCAATCAGAGATGTTGTTTTCTTGACAGAAGAAATTGT TTCCATCTTGATGCAATCTGTGCGAGAAATTGTATGTAGTGGTCCGTCAAGGGAGCAATTACAGAAGTCGAAAGCAACCAAAGATGGCATAAAATACGGA CAGGTTTCACTTGCCGCAGCAATGACTCAGGTGAAACTTGCAGCTGCTCTTGGGGCTTCTTTAGTATGGCTATCTGGAGGGTTGGTGCTGGTTCAATTAT TAATAAAAGAGACTTTGCCCTCATGGTTTATATCTGTTCACAGATCAGGCCAGGAAGAAAAGTCAGACGGAATGGTTGCAATGCTTGCTGGATATGCACT TGCTTACTTTGCAGTGCTTAGTGGGGCTTTTGCTTGGGGAGTTGACTCATCATCATCGGCTTCAAAACGACGTCGAAAAGTCTTAGGTGTCCACATGGAG TTTCTGGCAAGTGCACTCGATGGAAAAATATCACTTGGCTGTGATTCAGCTACTTGGCGAGCCTATGTGTCAGGGTTTGTGAGCCTGATGGTTAGTTGCA CGCCAAACTGGGTGCTAGAAGTAGATGTCGATGTGTTGAAGAGACTGAGCAATGGCTTGAGGCACTTGAATGAAGAGAAGCTTGCACTTGCTTTGTTGGG TAATGGTGGGGTTGGTACTATGGGTGCTGCAGCTGAACTCATAATTGAAAGTGGAAGGTAAGCTTATTCTCCAGCACCTGTGCCTTTTAGTATGCTTATG TACAGTAGTTTCATGTTTAAAAACTTGTGCAGTGCTAAATCTCCTCTTTTGTTTCAAAAGCATCACTTATGAGAATGGAAAATTTTGTATCTGAACTATG CTCAATCTAAGGTAACTTTCTTTCATGTTTGAAGTGATGAAACATTGCATAGGTAAAGATATGTTAAGTTTTTTATTCATTATTCTGGGGGGAAATAAAA CTACCAACTATTTATGAATCTATTAGTATTTTATTATTATATCACTCCATTGCTAAGGTATATAAGTGATTTGAAATACTGTGTATAAAGTATAATCAAT GAACATAGTATTAGACTTGGGTACTATTGTGTCTGAAATGTGAATGGTATTAATATATTTCTCCAATTGTTTCTAGCACAACTTTGCTAATTAGCAAAAG CAAAATTATTTTCTATTTCCACTTTTCTTTCATTAGTTTTTATTAAAAAACTTACTATTTTGAAGTTATCAAC
• Tissue: pods
• Gene name: LI_gene_191231;
• Additional information: details;

Expression of Ll_transcript_307016

FPKM

• PAB: 0.1
• PNAB: 0.2
• PS1: 1
• PS2: 0.4
• PS3: 0.6
• PW1: 0.7
• PW2: 4
• PW3: 6.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_307016

• Blastp: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 69.89% of identity
• Blastx: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 68.92% of identity
• Eggnog: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER)
• Kegg: Link to kegg annotations (AT3G23590)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419371.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;