Ll_transcript_307032

• Id Trinity: TRINITY_DN52248_c0_g1_i26
• Name Transcript: Ll_transcript_307032
• Sequence: TCTCACATGTTTAAGCCGATAAACCAAAACCATTTTTAAGTCCGGTCAGCGGTCAAACCGGTCAGAGTGACACCCCGCTTCTCATAACATTGATGTAAAT GCATTTCATTATGAGGTTGTGGTTATGAATTTGAACTTTTTGGAGTAAAGGCTCTCTTAAATAAGACCATAGTGTAAGGCGAGTAAGCAATAAACAGTGT TTTAAATTGTGAACGCGGTTGCTGCTGTTACTCTGCCTTTAGGAGTAATTGCGGGAATTTATAAGAATGCAGTCATTGCTGTTGCGGAGTGTAATTTAAA ACAAGCGAGCAAGTAAGAGTGTATCTAGTGTTGATTGATGTATTAAGATCTCAAACTATTTAATCATATAGAAGTGGATAGAACTTTACTTCTTCACTTT ATAAATGAGTTCACTCTAGGAGGCGGCTTCATCCATAATTTTTTATCTTGAAATTGAAATCAATTGCATTTACAAGGAAAGTCTAGCCACGGTTAATTTG TTTTTCCGTACTTCATCTTATGATCTTGTCCACCAAGTATGTTGCTCTTTCATTAATCGCAAAATTCTCATTCTTATGACCTTCATCTCTTGCTCATGAT TTCCATTCACTGCTCAGCATTCTGGTCCATAGTGTTAGTTTGTTTAATGAATAATTCCGCACTTGGTTTTTAATTGCAGTGGTGGTTATGTTGCATTTTA TCGCAATTTTGGAAAATCGTAGGCATTGACTACAATTGTGGTCGCAATGTGGTTGCGGAGACTCCCACAAATGCAATATCGCAACCACAATTGCAGTTGT GGACCTCAATATAAAACTATTACTGCTTGAGGCCTCGTAGGCCACAATTTTAATTTTAATTTTGTTAACTAATCATTACAGTTTGGTGTTGGAAAGAGGC AAGTTTATCATCCCAATTTGGAAGGGGAAGTATATGCCCAGTATTCCCATGTATTGATGTTGGTGAGTTAATATATCATATTTATGCTCTATTCTTTTTG GCAGGGTTCTTCCATGTAGGCATGTCCAGCCTGCAGCATATAGGCTGTATTTGGAACTCCTCAAAAGACATGCTTTTGAACTTAAATCTCAGACAAACAG ACCAGATTATCCAAGGGTCATGAAATCTATAGATGACGTCCTTCATCTTTCCCACATATTTGGCATGTCACAAAGTGAGCCTGGCATTCTGGTGGTTGAA TTTATTTTTTCAATTGTCTGGCAGTTACTTGATGCATCGTTGGATGATGAAGGGCTGTTGGAACTTACACTTGAAAAGAAGTCTATGTGGGAAACACTAT ATCAAGAAATGGAACTGGATAGGCATGATAATTATAATGATAAGAAGACCGAACATCATGAAAAATTGAGAAATGCAAATGCTCTTGTGGCTATCGAGAT GATTGGGCAGTTTTTGCAGGATAAAACATCTTCAAGAATTCTTTACTTGGCTCACCGAAATTTGCCTGCTCATTGGCTAAGCCTTGTTCAGCGGGTGCAG TTGCTCGGAGCAAATTCATTAACATTGAGAAATTCAAGAGTTTTAAGTCCTGAGGCACTTCTGCAACTGACTTCAGATACTTCTATGGCTTTGTCTCGAG AATACAAAACAAGTTCACAACATAAGTTTCATACAGTTATGGATTTTGAATATCTTTCTTCTTCTGCATCACTCTGCCATGGTGCAAGTCACTCTGCTCT TTGGATTCCTCTTGATCTCGTGCTGGAGAATGCCATGGATGGCTATGAAGTTAGTGCAACAAGTGCTATTGAAATAATTGGTGGTTTGATAAAGACTCTC CGAGCCATAAATGGGACCCCTTGGCATGACACCTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTATTCAGAGGGAAAGAGATCCTATCGAGGGCCCAA TGCCTCATCTTGATACTCGCTTATGCATGCTCTTGTGCATCATACCTCTTGTTGTTGCTGATCTTATTGAGGAGGAGGAGGAAAGGACACAAGTTGATGA AACAGAAACGGACAGTGATCCTACAAATAACTGGAAAGAGAAGATGGTTCCAGGAAAATGTCGCAATGATTTAGTCACGAGTCTGCAGGTATTGGGAGAT TATCACAGCTTGCTCACTCCACCTCAATCTGTTGTGGCTGCTGCAAATCAGGCTGCTGCAAAAGCAATGCTCTTTGTTTCTGGCTTCACAATAGGGAATG CAAATTTTGACTGCCTCAGCATGACAGAGATTCCAATTGACTGTTCTGGAAACATGCGTCATCTACTAGTTGAGGCTTGTATTGCTCGAAATCTACTCGA CACATCTGCATATTTATGGCCAGGTTATGTCAAGGGACATATCAATCAAATACCTCAGTGTATGCCAGTTCAACTACCAAGCTGGTTGTCGTTTATGGAC GGAGCACCACTTGATTCAGCGATGGTAAATGCTCTGGCTTCAAGTCCTGCTACAAGCCAGGTATGTCAGATGCTCTTTTTTGTAAATTTACCAAAAGGTA AAACTACTGAATTTACGCTCCTGGATTTAATGGAAGCTTAGCAGAACTGGAGAAAATTTTTGAAATTGCAATCGGGGGATCAGAAGATCAGAAGATATCT GCTGCTGCCATTCTTTGTGGGGCATCACTAATTAGAGGATGGAACATACAGGAGTACACTGCTCATTTCATTCTTAGGTTATTATCTCCACCTGTTCCTC TAGAGAACACTGAAGGAAACAACCATTTGATTGATTATGCTCCAATACTTAATGTAATCTTTGTTGGAATTGCATCCGTTGATTGTGTTCAAATATTTTC GCTCCATGGTTTGGTTCCGCAGCTTGCATGCTCATTGATGCCAATTTGTGAAGTTTTTGGGTCTTGTGTGCCTAATATTTCATGGACACTGACATCAGGG GTGCAAATATCTGCCCATGCTGTGTTTTCAAATGCATTTATTCTTCTTTTAAAGCTATGGAAATTTAATCGGCCCCCTCTTGAACATGGAATTGGAGATG TACCTACTGTTGGTTCTCAGTTAACTCCTGAATACCTACTATTAGTTCGAAACTCCCACTTAATGTCAGATGGTAACATCCACAAAGATCGAAACAGGAA GAGGCTATCTGAGATTGCAAGTTTATCATCACCAAATTCTGTATTTGTTGACTCCTTTCCAAAATTAAAAGTCTGGTACCGGCAGCATCAAGCATGTATA GCTTCAACACTGTCCGGTCTTGTTCATGGAACCCCTTTTCATCAAATTGTTGATGGGCTTCTTAACATGATGTTTAGAAATATTAGTAGAGGGGACCAGG TTACTATTGTATCTGGAAGCAGTAGTTCTTCTGGACCTGAAAATGAAGATACTTTTATAGGGACAAAGTTGCCTGCATGGGATATTTTGGAAGCCATTCC CTTTGTTGTTGATGCTGCTGTCACAGCCTG
• Tissue: pods
• Gene name: LI_gene_191231;
• Additional information: details;

Expression of Ll_transcript_307032

FPKM

• PAB: 0
• PNAB: 0.4
• PS1: 0.4
• PS2: 0.2
• PS3: 0.2
• PW1: 0.2
• PW2: 2.1
• PW3: 0.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_307032

• Blastp: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 55.83% of identity
• Blastx: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 54.9% of identity
• Eggnog: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER)
• Kegg: Link to kegg annotations (AT3G23590)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425895.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;