Ll_transcript_307043

• Id Trinity: TRINITY_DN52248_c0_g1_i36
• Name Transcript: Ll_transcript_307043
• Sequence: TATGTACTAAATGCTAAACTGATCGTGCACATCCCTCTGCTGAGTCTGCTCTGTCTCTATTTCCTTGTCCTTATCTCTGAAAGAACCTGGGACCCAAACA CAAAATCCCGAATTTGCCCCTACCCAATTTGTCTTATAATATATATGGAAAAAATCCAACGTTACTGGCTTGAAAATATTATCATCATATATAAATAAAT AAACGAAAAACATGTTGCTTAGTTTTTGAATTGCGAACTGTTACGGCGGCGATGGAGGTCACCGGCGGAAGGAACAGACGGTGGGAGGTGGCGGCGGTGG ATCTCACAAAGGCGGCGCAGGAGAAAGGGAGTGATCCTCTGTTATGGGCGATTCAGATGTATTCGAATTTGAATTCGGCGGGAGAGTCGTTACCATCTAT TGAACTCGCTGAGTTTTTGGTTTCTTACATTTGTTGGGATAATAATGTTCCTATTCTGTGGAAGTTTCTCGATAAAGCTCTCATGCTTCAAATTGTTCCA CCTTTGCATATTCTTGCTCTTCTCTCTGTTAGGGTTCTTCCATGCAGGCATGTCCAACCTGCAGCATATAGGCTATATTTGGAATTCATCAAAAGACATG CTTTTGGTCTTAAATCTCAGACAAACAGGCCAGATTATCCGAGGGTCATGAAATCTATAGATGATGTTCTTCATCTTTCCCACATATTTGGCATGTCACA AAGTGAGCCTGGCATTCTGGTGGTTGAATTTATTTTTTCACTTGTCTGGCAACTGCTTGATGCATCGTTGGATGACGAAGGGCTGCTGGAACTTTCACTC GAGAAGAAGTCTAAGTGGGCAACACTATATCAAGAAATGGATCTGGACATGCATGATAATTATAATGATAAGAAGTCTGGACATCATGAGAAATTGAGAA ATGCAAATACCCTTATGGCTATCGAGATGATTGGGCAGTTTTTGCAGGATAAAATATCTTCAAGGATTCTTTACTTGGCTCGCCGAAATTTGCCTGCACA TTGGCTATGTTTTGTTCAGAGGTTGCAGCTGCTTGGAACAAATTCATTAACATTGAAAAAGTCAAGAGATTTAAGTCCTGAGGCACTTCTGCAACTGACT TCAGATACTTCTGTGGTCTTGTCTCGAGAATGCAAAACAAGGTCACAACAGAAGTTCCATACAGTTATGGATTTTGAATATCTTTCTTCTTCAGCATCAC TCTGCCATGGTGCAACTCACTCTGCTCTTTGGATTCCTCTTGATCTCGTGCTGGAGGATGCCATGGATGGATATGAAGCTAGTGCAACAAGTGCTATTGA AATAATAAGTGGTTTGATAAAGACTCTCCAAGCCATAAACAGAGCCTCTTGGCATGACACCTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAG AGGGAAAGAGATCCTATTGAGGGCCCAATGCCTCATCTTGATACTCGCTTATGCATGCTCTTGTGCATAATGCCTCTTGTTGTTGCTGATCTTATTGAGG AGGAGGAGGAAAGGACACCAATTGATGAAATAGAAACAGACAGTGGTCCTACAAATAACTGGAAAGAGAAGGTTCCAGGAAAGCGTCGCAGTAATTTAGT CACAAGTCTGCAGGTATTGGGCGATTATCAGAGCTTGCTCACTCCACCTCAATCTGTTGTGTCTGCTGCGAACCAGGCTGCTGCAAAAGCAACGCTCTTT GTTTCTGGCTTCTCAATAGGGAGTGCATATGTTGACTGCCTCAGCGTGAAAGAGATTCCAATTAACTGTTCTGGAAACATGCGCCATCTACTAGTTGAGG CTTGTATTGCTCGAAATCTACTCGACACATCAGCATATTTATGGCCAGGTTATATCAAGGGACATATCAATCAAATACCTCAGTGTATGCCAGCTCAAGT ACCTGGTTGGTCATCATTTATGAATGGAGCACCACTTACTTCAGAGATGGTAAATGCTCTGGCTTCAAGTCCTGCTACATGGTATGATCTAATGTTTCTT TACTTCATTCTCAAGTTTAAAGCATAAGTCACTGTAAGAGTGAATGCTGAAACATGATATCATTTGCTTTCAATAAGAATCTATTCTACACTAAAATTAT AACTCAACAACTGTGAATTAAGTTGATAAAGTTTAACTTATTTTTAAAATTCCATGGCCTGGTCTTCAGTTATTTTTCTTTCCTGAAGCCAGGTATGTCA GATGCTCTTTTTTGTAAATTTACCCAAAGGTAAAGCAACTGAACTTACGCTCCTGGATTTAATGGAAGCTTAGCAGAACTGGAGAAAATGTTTGAAATTG CAATTGGGGGATCAGAAGACGAGAAGATATCTGCTGCTGCTATTCTTTGCGGGGAATCCCTAATTAGAGGATGGAACATACAGGAGCACACTGCTCATTT CATTCTTAGGCTATTATCTCCACCGGTTCCTCTAGAGAACACTGAAGGAAACAACCATTTGATTGATTATGCTCCAATACTTAACGTACTCTTTGTTGGA ATTGCATCTGTTGATTGTGTTCAAATATTTTCGCTTCATGGTTTGGTAAGTTCAATTCAAACCCTAATTATAAGTCTTGTCAAACAATGTTATAATTTTT TCTCTTCATACTGAAAATTTCTATAAAATTGAAGATACTTAAAGTGATGGATGAAATAAAAACATTTGGCCTGTCATTTGAGTTTTAATGGATGTTGAAT TCAGGTTCTTAGCTTTAATTGCTGTAGGAGAAGAATAACTGTCCAATATAAATGACGTTACTCAAGTTGAGATTGTTTTGCATACATTAGAATATAGTGT CTGTGTTGATTGGTTTGGTAATGTCCTGAATGTGGATTAGAAAATTTGTTCCACGGTTTGTTTGTGTTCAGTTTTTTCATGAATGTCGATGTAGAAGAGA AAGTGCATGACAATTACCTATCCTGCTTATGACCTGCACAGTTGTATATAACATATCATATTTTTTTATATGTAGCACATTAGTTATTATATATGCAGTT AATAGATTATTCTGAATAAAAAAATATTAGGTTTAGGGAGATAAAGCAGGTAAAACAAGGGAGGAGTGCTAGGATCAGACTCTAACACACTCCTATCAAC ACACTCCAAGCTATTGATCCACATTCCCACTTTTTAAAACATGTCACCTGATAACCTGCCTTCCCAGTTTACACATACTTCAAACTGTAACCCCCTCACT CGTTCGAAGAGCAACAATTACAGTTTGTTAGATTCACTCTAGGAACTTTATGGGCAAATAATCAATTCAACTGAACCTTCTCCAGGAGCAATAGGCGTAA TTTGACTAATTTCCTCTTTAATTGCCATCCTGGCCATCACTAATAGAAAGACCAATTTTTTTTTCCAGAGCCTGGGTGTAATTCCAAATCCTGATCATAT CTTACCCAGATAAGATAACAGGAAGGCCTTGCACCTAAATCGGTGTCAATTGCACAATCCCCCTGCCTTTCAACTTGTTCAAAACCAGCTTCGAAGCCTC ATATCCTTAACACAGTTGAGGGCAATTTATATTCCTAAGGGTTTTTCTTAGCTAATTCATCAAAATACTTAAGGGTTTTTCTATCACACAATTTCCCAAT CAGCTCTTTCTCCTGTTGAACAATCTTTTCTGTCACAATGATCTCATGTTGCTCTTCGTATGAGTTTGTAGAAGATTAAGGTTTTAAGAGTGGGTGATGT GGACCAATAGCTTGGAGTGTGTTAGAGAGTATGGTCCTAGCACTCCTCAAAACAAGAAAGGAATTATGCATTCTCACTTAAATGCATCCTTTCTATTTTC ATCTCTTTTTTGTTCTATTTTACTTTTATGATAGTTTGAATTAGTGCATTTCCCAAATCTACCAACAGGTTCCGCAGCTTGCATGTTCATTGATGCCAAT TTGTGAAGTTTTTGGGTCTTGTGTGCCTAATATTTCATGGACACTGACCTCAGGGGAGGAAATATCTGCCCATGCCGTGTTTTCAAATGCATTTATTCTT CTTTTAAAGCTATGGAAATTTAATTGTCCTCCTATTGAACATGGAATTGGAGATGTACCTACTGTTGGTTCTCAATTAACTCCTGAATACCTACTATTGG TTCGAAACTCCCACTTAATGTCAGCCGGTAACATCCACAGAGATCGGAACAGGAAGAGGTTATCTGAGATTGCGAGTTTATCATCGCCAAATTCTGTATT TGTTGACTCCTTTCCAAAATTAAAAGTCTGGTACCGGCAGCATCAAGCATGTATAGCTTCAACATTGTCTGGTCTTGTTCATGGAACCCCTATTCATCAA ATTGTTGATGGGCTTCTTAACAGGATGTTTAGAAAGATTAATAAAGGAGACCATATTACTATTACATCTGGAAGCAGTAGTTCTTCTGGACCTGGAAATG AAGATACATCTATAGGACCAAAGTTGCCTGCTTGGGATATTTTGGAAGCCATTCCCTTTGTTGTTGATGCTGCTGTCACAGCCTGTGCTCATGGAAGACT GTCTCCACGTGAATTGGCAACTGGGATTAAAGATTTAGCTGATTTTCTTCCTGCATCTCTGGCAAGTATAATAAGTTACTTCTCCGCTGAAGTAACTCGG GGTGTTTGGAAACCTGTATTTATGAATGGAACGGATTGGCCAAGCCCTGCCGCAAATCTACTGAACGTTGAGGAACAGATCAAGAAACTTTTGGCCGCAA CTGGTGTTGATGTGCCTAGCCTTGCTCCAGGAGGCAGCTCACCCGCCACACTTTCATTGCCCTTGGCTGCTTTCACAAGCCTCACCATAACCTACAAAGT TGACCGAGCATCAGAGCGTTTTCTTAATTTGGCTGGCCAAACATTGGAGTCTCTTGCTGCAGGTTGTCCATGGCCTAGCATGCCAATTGTGGCTTCCTTG TGGACCCAAAAGGCAAAACGTTGGAGTGACTTTCTTATCTTCTCAGCTTCTAGAACTGTCTTCCTCCATAACAGGGATGCAGTTGTTCAACTTCTGAAAA GCTGTTTCACATCTACCCTTGGCATGAATAGCTCTCCTATCACAAGCAGTGGTGGTGTTGGAGCCCTACTTGGCCATGGATTTAAGCCCCATTTTTGTGG AGGGATGTGCCCTGTTGCTCCAGGGATTCTCTATTTACGTGCTTATCGATCAATCAGAGATGTTGTTTTCTTGATAGAAGAAGTTGTTTCCATCTTGATG CAATCTGTGCGAGAAATTGTATGTGGTGGAAAGTCAAGGGTGCAATTACAGAAGTCGAATGCAACCAAAGGGGGCATAAAATATGGACAGTTTTCACTTT CCGCAGCAATGACTCGGGTGAAGCTTGCAGCTGCTCTCGGGGCTTCATTAGTATGCCTATCTGGAGGCTTGACGCTAGTTCAATTATTAATAAAAGAGAC TTTGCCATCCTGGTTTATATCTGTTCACAGATCAGGCCAGGAAGAAAACTCAAATGGAATGGTTGCAATGCTTGGTGGATATGCACTTGCCTACTTTGCA GTGCTTTGTGGGGCTTTTGCTTGGGGAGTTGACTCATCATCATCGGCTTCAAAACGACGTCCGAAAGTCTTAGGTGTTCACATGGAGTTTCTCGCAAGTG CACTTGATGGAAATATATCACTTGGCTGTGATCCGGCTACTTGGCGAGCCTACGTGTCGGGGTTCGTAAGCCTGATGGTTGGTTGCGCGCCAAACTGGGT GCTGGAAGTAGATGTAGATGTGTTGAAGAGACTGAGCAATGGGTTGAGGCAGTTGAATGAAGAAGAGCTTGCACTTGCTTTGTTGGGTGATGGTGGGGTA GGTACTATGGGTGCTGCAGCTGAACTCATAATTGAAAGTGGAATGTAAACTTATCCTCTCTATTATGACAGCACCTGTGCCTTTTAGTATCCTTTGTACA TCCATTCTTGTTTCAAATGCTGTGCAGTGCTAAATCACCTTTTTTTGTTTGGAAAGCATAACTTACGAGAATGGAAAATTTTGTATCTAAACAATGCTCA ACCCAAGGCATGTTTGAATCCATCAAATTGCATCTGTGTAAGTTCAGTTTCTAAACTCAGCTAAAGATGTGTTAAGTTTCTCAAATGGGGTAAGGATTAA ACCAAAGTGAAATTCAGTTTATTGGAATTTGGAAACCGTTG
• Tissue: pods
• Gene name: LI_gene_191231;
• Additional information: details;

Expression of Ll_transcript_307043

FPKM

• PAB: 1.1
• PNAB: 2.7
• PS1: 6.2
• PS2: 2.1
• PS3: 5
• PW1: 1.3
• PW2: 1.6
• PW3: 5.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_307043

• Blastp: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 68.15% of identity
• Blastx: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 68.02% of identity
• Eggnog: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER)
• Kegg: Link to kegg annotations (AT3G23590)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419371.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;