Ll_transcript_307008

• Id Trinity: TRINITY_DN52248_c0_g1_i4
• Name Transcript: Ll_transcript_307008
• Sequence: TATGTACTAAATGCTAAACTGATCGTGCACATCCCTCTGCTGAGTCTGCTCTGTCTCTATTTCCTTGTCCTTATCTCTGAAAGAACCTGGGACCCAAACA CAAAATCCCGAATTTGCCCCTACCCAATTTGTCTTATAATATATATGGAAAAAATCCAACGTTACTGGCTTGAAAATATTATCATCATATATAAATAAAT AAACGAAAAACATGTTGCTTAGTTTTTGAATTGCGAACTGTTACGGCGGCGATGGAGGTCACCGGCGGAAGGAACAGACGGTGGGAGGTGGCGGCGGTGG ATCTCACAAAGGCGGCGCAGGAGAAAGGGAGTGATCCTCTGTTATGGGCGATTCAGATGTATTCGAATTTGAATTCGGCGGGAGAGTCGTTACCATCTAT TGAACTCGCTGAGTTTTTGGTTTCTTACATTTGTTGGGATAATAATGTTCCTATTCTGTGGAAGTTTCTCGATAAAGCTCTCATGCTTCAAATTGTTCCA CCTTTGCATATTCTTGCTCTTCTCTCTGTTAGGGTTCTTCCATGCAGGCATGTCCAACCTGCAGCATATAGGCTATATTTGGAATTCATCAAAAGACATG CTTTTGGTCTTAAATCTCAGACAAACAGGCCAGATTATCCGAGGGTCATGAAATCTATAGATGATGTTCTTCATCTTTCCCACATATTTGGCATGTCACA AAGTGAGCCTGGCATTCTGGTGGTTGAATTTATTTTTTCACTTGTCTGGCAACTGCTTGATGCATCGTTGGATGACGAAGGGCTGCTGGAACTTTCACTC GAGAAGAAGTCTAAGTGGGCAACACTATATCAAGAAATGGATCTGGACATGCATGATAATTATAATGATAAGAAGTCTGGACATCATGAGAAATTGAGAA ATGCAAATACCCTTATGGCTATCGAGATGATTGGGCAGTTTTTGCAGGATAAAATATCTTCAAGGATTCTTTACTTGGCTCGCCGAAATTTGCCTGCACA TTGGCTATGTTTTGTTCAGAGGTTGCAGCTGCTTGGAACAAATTCATTAACATTGAAAAAGTCAAGAGATTTAAGTCCTGAGGCACTTCTGCAACTGACT TCAGATACTTCTGTGGTCTTGTCTCGAGAATGCAAAACAAGGTCACAACAGAAGTTCCATACAGTTATGGATTTTGAATATCTTTCTTCTTCAGCATCAC TCTGCCATGGTGCAACTCACTCTGCTCTTTGGATTCCTCTTGATCTCGTGCTGGAGGATGCCATGGATGGATATGAAGCTAGTGCAACAAGTGCTATTGA AATAATAAGTGGTTTGATAAAGACTCTCCAAGCCATAAACAGAGCCTCTTGGCATGACACCTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAG AGGGAAAGAGATCCTATTGAGGGCCCAATGCCTCATCTTGATACTCGCTTATGCATGCTCTTGTGCATAATGCCTCTTGTTGTTGCTGATCTTATTGAGG AGGAGGAGGAAAGGACACCAATTGATGAAATAGAAACAGACAGTGGTCCTACAAATAACTGGAAAGAGAAGGTTCCAGGAAAGCGTCGCAGTAATTTAGT CACAAGTCTGCAGGTATTGGGCGATTATCAGAGCTTGCTCACTCCACCTCAATCTGTTGTGTCTGCTGCGAACCAGGCTGCTGCAAAAGCAACGCTCTTT GTTTCTGGCTTCTCAATAGGGAGTGCATATGTTGACTGCCTCAGCGTGAAAGAGATTCCAATTAACTGTTCTGGAAACATGCGCCATCTACTAGTTGAGG CTTGTATTGCTCGAAATCTACTCGACACATCAGCATATTTATGGCCAGGTTATATCAAGGGACATATCAATCAAATACCTCAGTGTATGCCAGCTCAAGT ACCTGGTTGGTCATCATTTATGAATGGAGCACCACTTACTTCAGAGATGGTAAATGCTCTGGCTTCAAGTCCTGCTACATGCTTAGCAGAACTGGAGAAA ATGTTTGAAATTGCAATTGGGGGATCAGAAGACGAGAAGATATCTGCTGCTGCTATTCTTTGCGGGGAATCCCTAATTAGAGGATGGAACATACAGGAGC ACACTGCTCATTTCATTCTTAGGCTATTATCTCCACCGGTTCCTCTAGAGAACACTGAAGGAAACAACCATTTGATTGATTATGCTCCAATACTTAACGT ACTCTTTGTTGGAATTGCATCTGTTGATTGTGTTCAAATATTTTCGCTTCATGGTTTGGTTCCGCAGCTTGCATGTTCATTGATGCCAATTTGTGAAGTT TTTGGGTCTTGTGTGCCTAATATTTCATGGACACTGACCTCAGGGGAGGAAATATCTGCCCATGCCGTGTTTTCAAATGCATTTATTCTTCTTTTAAAGC TATGGAAATTTAATTGTCCTCCTATTGAACATGGAATTGGAGATGTACCTACTGTTGGTTCTCAATTAACTCCTGAATACCTACTATTGGTTCGAAACTC CCACTTAATGTCAGCCGGTAACATCCACAGAGATCGGAACAGGAAGAGGTTATCTGAGATTGCGAGTTTATCATCGCCAAATTCTGTATTTGTTGACTCC TTTCCAAAATTAAAAGTCTGGTACCGGCAGCATCAAGCATGTATAGCTTCAACATTGTCTGGTCTTGTTCATGGAACCCCTATTCATCAAATTGTTGATG GGCTTCTTAACAGGATGTTTAGAAAGATTAATAAAGGAGACCATATTACTATTACATCTGGAAGCAGTAGTTCTTCTGGACCTGGAAATGAAGATACATC TATAGGACCAAAGTTGCCTGCTTGGGATATTTTGGAAGCCATTCCCTTTGTTGTTGATGCTGCTGTCACAGCCTGTGCTCATGGAAGACTGTCTCCACGT GAATTGGCAACTGGTATGTGTTTAGGTCAAATAAATCCAAGGGAACATGTCAAGTAACTTGTAGAAGTAGTGATTTCTAAAATCTAAAGTAGTGTATAGA TCTAATATGTTGGCAAACATTAACCTTTCAAAATTATCCTTGATGTCTTCAGACCAACCAGATAAGTTCATGTAGATGTGCCTTGATGTACGAATTATGC AACCATGCCATAATATCAGAAATTTTCTTATTTTTGTTAATATCAGGGATTAAAGATTTAGCTGATTTTCTTCCTGCATCTCTGGCAAGTATAATAAGTT ACTTCTCCGCTGAAGTAACTCGGGGTGTTTGGAAACCTGTATTTATGAATGG
• Tissue: pods
• Gene name: LI_gene_191231;
• Additional information: details;

Expression of Ll_transcript_307008

FPKM

• PAB: 0.4
• PNAB: 1.9
• PS1: 3.3
• PS2: 2
• PS3: 2.4
• PW1: 0.8
• PW2: 1.2
• PW3: 1.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_307008

• Blastp: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 60.25% of identity
• Blastx: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 60.29% of identity
• Eggnog: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER)
• Kegg: Link to kegg annotations (AT3G23590)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419371.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;