Ll_transcript_307010

• Id Trinity: TRINITY_DN52248_c0_g1_i6
• Name Transcript: Ll_transcript_307010
• Sequence: CAAAAAATTAAATAATGCTGTGTTGAGTTTGTGAACTCTGAACTGCTCCGGCGGCGATGGAGGTTTCCGGTGGAAGGAGGTGGGAGGCGGAGGTGGTGGA GTTAACAAAGGTGGCGCAGGAGAAAGAGAGTGATCCTCTGGTATGGGCAATTCAGATGCATTCGAATTTGAACTCAGCGGGAGAGTGTTTACCCTCCGTT GAACTCGCGGAGTTATTGGTTTCTTACATTTGTTGGGACAATAATGTTCCTATTCTATGGAAGTTTCTCGATAAGGCTCTCATGCTTCAAATTGTTCCTC CCATGCTTCTTCTGGCTCTTCTTTCTCTCAGGGTTCTTCCATGTAGGCATGTCCAGCCTGCAGCATATAGGCTGTATTTGGAACTCCTCAAAAGACATGC TTTTGAACTTAAATCTCAGACAAACAGACCAGATTATCCAAGGGTCATGAAATCTATAGATGACGTCCTTCATCTTTCCCACATATTTGGCATGTCACAA AGTGAGCCTGGCATTCTGGTGGTTGAATTTATTTTTTCAATTGTCTGGCAGTTACTTGATGCATCGTTGGATGATGAAGGGCTGTTGGAACTTACACTTG AAAAGAAGTCTATGTGGGAAACACTATATCAAGAAATGGAACTGGATAGGCATGATAATTATAATGATAAGAAGACCGAACATCATGAAAAATTGAGAAA TGCAAATGCTCTTGTGGCTATCGAGATGATTGGGCAGTTTTTGCAGGATAAAACATCTTCAAGAATTCTTTACTTGGCTCACCGAAATTTGCCTGCTCAT TGGCTAAGCCTTGTTCAGCGGGTGCAGTTGCTCGGAGCAAATTCATTAACATTGAGAAATTCAAGAGTTTTAAGTCCTGAGGCACTTCTGCAACTGACTT CAGATACTTCTATGGCTTTGTCTCGAGAATACAAAACAAGTTCACAACATAAGTTTCATACAGTTATGGATTTTGAATATCTTTCTTCTTCTGCATCACT CTGCCATGGTGCAAGTCACTCTGCTCTTTGGATTCCTCTTGATCTCGTGCTGGAGAATGCCATGGATGGCTATGAAGTTAGTGCAACAAGTGCTATTGAA ATAATTGGTGGTTTGATAAAGACTCTCCGAGCCATAAATGGGACCCCTTGGCATGACACCTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTATTCAGA GGGAAAGAGATCCTATCGAGGGCCCAATGCCTCATCTTGATACTCGCTTATGCATGCTCTTGTGCATCATACCTCTTGTTGTTGCTGATCTTATTGAGGA GGAGGAGGAAAGGACACAAGTTGATGAAACAGAAACGGACAGTGATCCTACAAATAACTGGAAAGAGAAGATGGTTCCAGGAAAATGTCGCAATGATTTA GTCACGAGTCTGCAGGTATTGGGAGATTATCACAGCTTGCTCACTCCACCTCAATCTGTTGTGGCTGCTGCAAATCAGGCTGCTGCAAAAGCAATGCTCT TTGTTTCTGGCTTCACAATAGGGAATGCAAATTTTGACTGCCTCAGCATGACAGAGATTCCAATTGACTGTTGTAAGTCATATTGCTTTCAGTAATTCAG TGTCAATCAGAAATTGCCTATGGTTCTTCAGCAGCTTGAGTAATTTATATCAACTTTAGCACTGCATACTGACGATGTTGTTTTCCATTTGAGATTCTCC ATGTGAGTTTTCTTCCTGATTTAAAAAAACACATGCCTCATATTTCAGACGTTTAGATGAATAAATAAAACAAAAATCTGTGTGATAATGTATCTGATTG CTGTGAAGACAATCTTTATCGTCTGATTTAAGTAAATTTGAACTTTGGAAAAGCAAATGGATTACACAATTTGAATCTATGATAGCTATGCTGTAGTCAA GACACAAGGATCCATAACAGTTACTCGTGTTCCCACATTATTCTTTGGATTGATTATGTGACTGTACAGAAGTGGAAATGATCTTATTTTGCTAAATATT TGTGCTAAACAAAATCATTGCATGGTTGAATAAAGAAAAATCATTTCCCTTGTCATAAACTATCTCTCCCAAAATCTTAAGTTGTTGATAAAGGCGTACG AGTGATTTGTATTACATCTCTTAACACATTCCCTTTACCCCAAAAGCTTGTGCTTAAATTCAATTTATTATTGTTAAATAGGGCAGCAAGGACCAACCAC TTGTCCCATTCCTGTATTTGTTAAATTTCTAGTTTAGCATTTCAATTTTCCCAAAGTTAGCGATTCTGCATTTTATATTTGGCAGTTTATTTCGTAAGGA ATTTGTACTCTTGATGCTATACAGAGTCAATCCTATGCCTAGATAAAAGGTGGAGATTATGTTAGGCAGTCAACAACTAACATAAAACTTTGTCGACTCT CTATGAATCATTCAGGAGTTATATATCTGAGAAAAAATGAAGGAAAACAATCTTGGGAAAAATAATTTTATTTAGTAATAACTAACAACCCAACAGAATA ACAATATCTTAAGAACAGTGGTGCAAACAGTTATTGACCTAATCGACCAGTTGACTGGTTAATGTTCCCAAATTGTAATAATTTTACAAATAATTGTTTC TTTGTAATTTCCCTTAATTTTGTAAAACTATTTCTTCTTTTCAGCTGGAAACATGCGTCATCTACTAGTTGAGGCTTGTATTGCTCGAAATCTACTCGAC ACATCTGCATATTTATGGCCAGGTTATGTCAAGGGACATATCAATCAAATACCTCAGTGTATGCCAGTTCAACTACCAAGCTGGTTGTCGTTTATGGACG GAGCACCACTTGATTCAGCGATGGTAAATGCTCTGGCTTCAAGTCCTGCTACAAGCTTAGCAGAACTGGAGAAAATTTTTGAAATTGCAATCGGGGGATC AGAAGATCAGAAGATATCTGCTGCTGCCATTCTTTGTGGGGCATCACTAATTAGAGGATGGAACATACAGGAGTACACTGCTCATTTCATTCTTAGGTTA TTATCTCCACCTGTTCCTCTAGAGAACACTGAAGGAAACAACCATTTGATTGATTATGCTCCAATACTTAATGTAATCTTTGTTGGAATTGCATCCGTTG ATTGTGTTCAAATATTTTCGCTCCATGGTTTGGTTCCGCAGCTTGCATGCTCATTGATGCCAATTTGTGAAGTTTTTGGGTCTTGTGTGCCTAATATTTC ATGGACACTGACATCAGGGGTGCAAATATCTGCCCATGCTGTGTTTTCAAATGCATTTATTCTTCTTTTAAAGCTATGGAAATTTAATCGGCCCCCTCTT GAACATGGAATTGGAGATGTACCTACTGTTGGTTCTCAGTTAACTCCTGAATACCTACTATTAGTTCGAAACTCCCACTTAATGTCAGATGGTAACATCC ACAAAGATCGAAACAGGAAGAGGCTATCTGAGATTGCAAGTTTATCATCACCAAATTCTGTATTTGTTGACTCCTTTCCAAAATTAAAAGTCTGGTACCG GCAGCATCAAGCATGTATAGCTTCAACACTGTCCGGTCTTGTTCATGGAACCCCTTTTCATCAAATTGTTGATGGGCTTCTTAACATGATGTTTAGAAAT ATTAGTAGAGGGGACCAGGTTACTATTGTATCTGGAAGCAGTAGTTCTTCTGGACCTGAAAATGAAGATACTTTTATAGGGACAAAGTTGCCTGCATGGG ATATTTTGGAAGCCATTCCCTTTGTTGTTGATGCTGCTGTCACAGCCTGTGCTCATGGAAGACTGTCTCCTCGTGAGTTGGCAACAGGTATGTGTGTTTA GGTCAGATAAATCCAAGGGGACACACCAAGTAACTTGAAGAAGTAGTGATGTCTAAAGTACTATAGAGCTCTAACATGTTGGCAAACTATATAAATATTC GCTCAGTAGCTTAACCTTTCAAAATTATCCTTGATGTCTTCACAGCAACCAAATAAGTTCACTTAGATGTTCCTTCATGAATGCATTATCAACAATGTCA TAGTATCAGATTTTTTTTCTTATTTTGTTAATATCAGGGCTGAAAGAATTAGCTGATTTTCTTCCTGCATCATTGGCAACTATAATAAGTTACTTCTCTG CTGAAGTAACTCGAGGTGTTTGGAAACCTGTATTTATGAATGGAACGGATTGGCCAAGCCCTGC
• Tissue: pods
• Gene name: LI_gene_191231;
• Additional information: details;

Expression of Ll_transcript_307010

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0.1
• PS2: 0
• PS3: 0.1
• PW1: 0.2
• PW2: 0.2
• PW3: 0.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_307010

• Blastp: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 53.98% of identity
• Blastx: Mediator of RNA polymerase II transcription subunit 33A from Arabidopsis with 68.31% of identity
• Eggnog: Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the repression of phenylpropanoid biosynthesis. May compete with MED33B for common binding partners or for occupancy in Mediator(ENOG410XPER)
• Kegg: Link to kegg annotations (AT3G23590)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425895.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;