Id Trinity | TRINITY_DN52249_c2_g1_i11 |
---|---|
Name Transcript | Ll_transcript_304950 |
Sequence | ATTTTGTTTAAGAAATTGCATTTATCTCTCCTATAGGGGTGGTCAATGTAATATATGTATATAATTAGGGGTGGTTTGTGTAATAGTTAAGGGTGGTTTG TGTAAGTGTAAACAAGGGAGGAGTGGTTTGTGTATTTTCAATAAAACTCAGGGGGTGTTAGTGTAATTTACTCTATTTTATTTAATGTTTGACTAATGAC TCACTAGTTGAAGTAGTGATGCATTGACCCAGAACCCTGGTTGAGTCAATCACTGATTGGTGTGCTAAAACTATGTTGTAATCTTAATTTAAATCTGGGG ATAGCTGTTTTATGATTATATATTTATTCTTTCTATTGCAATACACTGTAAACTGTACCCTACGAATGGATTTTCTAACTATTGTGAATTAGTTGGCCGG GGCTGTAAGTGAGGATGAATTTGCAACAAGCTGGACAGCTTAAATCGTCCAATGGATATGGCCGTAGAAAATCTGAAAGAGATGGGGTAATGAAAACAGA GAATAAGATCCCATCTGGAAAATTAAATGCCAGCAGATTGGCCAGTACAGGTGCGGTTACTGGCAGTAAAGGTGGTAGTTATGAGAGTCCTTCACTTGAT CGACTAGTATATATAGCAACATGTCTTATTGGGCACCTAGTGGAGGTCCAGGTGAAAAATGGATCTGTATACTCAGGAATATTTCATGCAACAAATGCTG ACAAAGATTTTGGAATAATTTTGAAAATGGCCCACTTAGTCAAGGATGGTTCTTTGCGAGGGCAGAAGTCTGGCGTAGAATTTATCGGCAAGTCTCCTTC AAAGATTTTAATTATACCTGCCGTGGAACTTGTACAAGTCATAGCAAAGGGTGTTGCTGTTACTAGGGATGACCTAGCTAGTGAATCACACCATGATATG CATCAGGAAATCATGGTTGATTCATTTATATCTCAGTCCCGTCATGTTGACCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGATGATCCTCAAT TTCCGGAACTGGAAAATATCTTTGATGGCCATTGGAACAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTAAAAAGTACATTCAATGA GGATCTCTACACAACAAAGCTTGAAAGAGGGCCTCAGACAAGAGAATTGGAAAGGCAAGCTTTAAGAATAGCTAGAGAGATTGAGGGCGAGGACACCCAA GATCTTCATCTTGCAGTGGAAAGAGGCCTTCATGTAAATGAGAACCTTGATATTGATGAAGAAACTATGTTCTCTTCAGTCTATAGGGGTAAAGGTGTTG ATGATAGTGGATATGATGAAAATGAGGACATGTTTGATTCACACAATTCTGATACGTTTGGTGGCATTAAGTGGCCCAATGAAATAAGTGGTGGAAAAGG CAATGTTGGAGCTCCAACAGTGGGAAACTCATCCTATGTGTTAGCACCTGAACTGCCTGCCAAAAGCTACACATCTTTGGATGGAGAAAGCAGGATTCAG GAGAACTTGGTTAGTGATCTACCCAGAGGCAATGCTAATACAAAGGAAGAAAGTCAGGTGCAAGCTGAGGATGTTCAACTGTCAAAATCTGAGGATTCAA AGGCTTCACTCTATCTGAAGAAAGATGGCTCAGATAAAGGGATATTATCTCCTAATGCCACCTCATATGCTCCTTCATCTCTTACTTTATCTAAGACTCA TGAGAAGACAGGATCACCTGGTGATCTGACTGAGGGTTCAGCATATGGCAAAGCGACTGGGGAAGCAAAATCTGCAAACTCACATCGGCCTTCTGCTCGT CCTGGTTTATCTCCAAGTTCATCAGTGGGTTCATTGTCTTCTGAGAAATCAAGTCTCAATCCCAATGCAAAGGAATTCAAACTCAACCCTAATGCAAAGC TTTTTATTCCATCTCAAGCACCTATTCGGCCTCCCTCCCCTGCGTCTGAGGCTTCCTTCTATTTTCCAACTACTGTGCAAAATGTGCCAGGCATGCCCAT GGGTATTGGAATTGGACCTAATTTTGCTGGGCCGCAACCTATCATATACAATCCACAAGTAGCACAAATGCAATCTCAAGCTTATTTTTATCCAAATGGG CCACAGTACGGACAGCTTCTTGGTCCTAGACAAGCTGTATACATGCCAGGCTACCTACCTGAAATGCAATACAAGGGACGCGAGTATTGATGACTTGGCC GATTGTGCATTCTTGGCAAGTCCACTCCTTGCCTGAAAAGAATGAACCCAGTGGATAGCTTGAAAACTTTAAATGATGATATCTGCAGCTTATTGGAAGA TTCCATGAAGGCTTTATTTACATATTCCATGCAAGCTTGTTGTTTTGGGATATACTTTTATGACATCTAATGTTTCTCAGGTTTTGGTGGTGTAATAACT TAGCTCATATTGACCCCCTTGTTTTCCCTGTTTAATATTATGCAACATTTACTTTTACTTATTATCCATCTATGACATGCACATTTGTTATGTGTTACTA TTGTTTATGTTAATTTTCCAGGTCAATCACATGCTCATTCACTACTACCTGGTAAGTAACCCTGAAATGTTTTTCAATGTTGATGCCAACATATTGCCAA ATGTCTTTGTTGAAGTTGTGTCTGAGCGACCTCTTTTGAATTATAATGTTAATTTCTCGAG BLAST |
Tissue | pods |
Gene name | LI_gene_191235; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_304950
Blastp | Polyadenylate-binding protein-interacting protein 4 from Arabidopsis with 43.27% of identity |
---|---|
Blastx | Polyadenylate-binding protein-interacting protein 4 from Arabidopsis with 43.02% of identity |
Eggnog | stress granule assembly(COG5180) |
Kegg | Link to kegg annotations (AT3G14010) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019436523.1) |
Pfam | Ataxin 2 SM domain (PF14438.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |