Ll_transcript_304945

• Id Trinity: TRINITY_DN52249_c2_g1_i8
• Name Transcript: Ll_transcript_304945
• Sequence: TTTCATGCCTATCCATCTAAGATAATTAATTTGAATTTGACTGTTAGAGATAAATATTTGAAAATAATATAGAGTTCATCATTTGCTTCAAAACGTTCTC TCTCTCTCTCTCTCATTTTTTTGCAGCTTCCTTCAAAGCCACTCTTTCTCTTTCTCTCTCTCGCGATCAGAGCGAGGGAATCCAAACTTCGGCGCCGTTC TCCGCCGCATCGGTTCCTGTCTCCGTCCAACTTTCCGGCTTCCACTGGAATCGATCAATTAAATTGTGATCAAGCTCTTCTAGTGGGGCAGGGGGTGTAA ATCATGATGAATTTGCAACAAGCTGGGCAGCCTAAATCGTCTAATGGATATGGTCGTAGAAAATCTGAAAGAGAAGGGGTAACAAAATCAGAGAATAGGG CCCCATCTGGAAAATTAAATTTCAATAGATTGGCCAGTACAGGTGCAGTGATTGGCAGTAAAGGTGGTAGTTATGAGAGCCCTTCACATGATCGATTAGT ATATATAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCCGGAATATTTCATGCAACAAATGCTGACAAAGAG TTTGGAATCATTTTGAAAATGGCCCGCATAGTCAAGGATGGTTCTTTGAGAGGCCAGAAGTCTGGTGTAGAATTTTTTGGCAAGGCCCCTTCAAAGATTT TAATTATACCTGCCGTGGAACTTGTACAAGTCATAGCAAAGGGTGTTGCTGTTACTAGGGATGACCTAGCTAGTGAATCACACCATGATATGCATCAGGA AATCATGGTTGATTCATTTATATCTCAGTCCCGTCATGTTGACCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGATGATCCTCAATTTCCGGAA CTGGAAAATATCTTTGATGGCCATTGGAACAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTAAAAAGTACATTCAATGAGGATCTCT ACACAACAAAGCTTGAAAGAGGGCCTCAGACAAGAGAATTGGAAAGGCAAGCTTTAAGAATAGCTAGAGAGATTGAGGGCGAGGACACCCAAGATCTTCA TCTTGCAGTGGAAAGAGGCCTTCATGTAAATGAGAACCTTGATATTGATGAAGAAACTATGTTCTCTTCAGTCTATAGGGGTAAAGGTGTTGATGATAGT GGATATGATGAAAATGAGGACACGTTTGATTCACATAATTCTGATACCTTTGGTGGTATATTTGGTTCGGCCATTAAGAGGCCTGGTGAAATAGATAACA GAAGAGGCAATGATGGAGCTCCAACAGTGGGAAATCCCTCCTCTGTGGATCACCCACATTTCTTTCAGTCAAGTACTGGTGTGGATTTAATCCATTCTGG TTCGTTTGATCATGCTAAGCAGTTACTTTTGGATGGAGAAAGGAGGATTCAGGAGAACTTGGTTAGTGATCTACACGGAGGAAATGGTAACACAAAAGAA GAAAATAACATACAAGCTGAAGATGTTCAACTGTCAAAATCTGAGGATTCAAAAGCATCACTCTACTTAAAGAAAGATTGCTCTGATAAAGGGGTATTAT CTCCTAATGCCACCTCATATGCCCCTTCACCACTTACTTTATCTAAGACTCGTGAAAAGACAGGATCGCCTGGTAATTTGACTGAGGGTTCAGCATATGG GAAAGCAAAATCTGTAAATTCCCATGGGACATATTCCCGTTCAGATTCTGGGGTAGGTGTGGCAGTATCGTATCGTCCTGGTGGTTTATCTCCAAGTTCA TCAATAGGTTCATTGTCTTCTGAGAAATCATCTCTCAATCCCAATGCAAAGGAATTCAAGCTCAACCCTAATGCAAAGAGTTTTACTCCATCTCAAGCAC CTATTCGGCCTCCCTCCCCTGCATCTGATGCTTCCTTCTATTTTCCACCTACTGTACAAAATGTGCCAGGCATGCCCATGGGTGTTGGAGTAAGTATTCC ATGTTTAGATATTCTTTAATCTCCAGTGAGAGATATATGTATTATATTACATTTCAGTTTTAACTTTACCCTGGTTCCTGTATTGGGTTTTCAGTTGGGA ACGAATTCCTTACATGAGAGGCAGCTATGAATTTATTTTCACACTAGATTCAGTTAACTCCAAAGTATATTTTTGGTTTTCAATCAACCTGTGTTTCTAA AATTAGGTGGTTTCTATTTTATGTTGCTGCTTATTTCTGGTTTATGATGATTGCTTTAACTTACTGTGTATCCACTGTTCCACTTTGGAGACCAGAACTT TGATTGGGAGGGTGGAATATGGTAGTTAGTTCATAGAACTATAGAAGCAATCCACTTTTAGGTGTAGTCATTTTGGAGTTCATTTAGAGCATCTACTGAA TATATTTTGTAGGATTTATTAGTTATTGGGTGGAATACTTCCCCAAGACTTACTAAGAAATTTGACTTGTGTCATTTGATAAAAGCATTATGATTAAGTG TGAAATTGACCTAGTCACTCCCCAATCACTGTCACAATATGTGGTGTTGGGCATGTTACTATCAGTGTGGTTGTCCAATCTTGTGGTGATTAATAAAAAT GACAGCAACCAAAGCCTTTTTCCACTTAATGAGGTTGACTCTATGGATCAGGCGACACCATTGTAAATTCCTGATAGCTAATTTAAGTATACAAATACCT CATTATTCTGACAGGGAGAATTTAATTGTTTACAAACTTGATTGTGTTGCTTATGTATTGCAGATGGGACCTACTTTTGCCGGGCCTCAACCTATCATAT ACAATCCGCAGGTTGCACAAATGCAATCTCAAGCATATATTCATCCAAATGGGCCACAGGTAGGGATATAAAATTGCAGTATCTCACTGGTCACTGGTGG CTGTTACGTGAATTTGGGTGCTTTACCGTAACTGCTTATTGTCTGATTGCAGTATGGACAGCTTCTTGGTCCTAGGCAAGCTGTATACATGCCAGGCTAC CTACCTGAAA
• Tissue: pods
• Gene name: LI_gene_191235;
• Additional information: details;

Expression of Ll_transcript_304945

FPKM

• PAB: 0.6
• PNAB: 0.2
• PS1: 0.2
• PS2: 0.5
• PS3: 0.3
• PW1: 0.2
• PW2: 0.2
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_304945

• Blastp: Polyadenylate-binding protein-interacting protein 4 from Arabidopsis with 44.04% of identity
• Blastx: Polyadenylate-binding protein-interacting protein 4 from Arabidopsis with 43.58% of identity
• Eggnog: stress granule assembly(COG5180)
• Kegg: Link to kegg annotations (AT3G14010)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019458262.1)
• Pfam: Ataxin 2 SM domain (PF14438.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;