Ll_transcript_304740

• Id Trinity: TRINITY_DN52268_c2_g3_i3
• Name Transcript: Ll_transcript_304740
• Sequence: TGTTTTTAACTCGGCCACTATTGAATTTTTAGGCTCAGACCATGACAAAAACAATACTCTAGAGAGTGCATCAGCAGCCAAGTTGTCTTTTCCTGGCTTG TACTCAATGGTGAAGTCGTAGCCTAAGAATCTATGGAGCCACTTTTGTTGTTCTGGGGTGTGCAAACTTTGCTCCATTAAACTTCTTAAGCTTTGCTGAT CGGTGCGAATAATAAATCTATGACCCAATAGATAGTGTCTGAACTTCGCAATTGCTTCAGCTATGGCCAGCATTTCTCTAAAATAAGCAGACTTTTGTTG AGTGCGTGGTGCAAGTTTCTTGGAAAAATAGGCAATTGGGTGGCCATTTTGGTGTAACACTGCGCCTATGCCAACCCCCGAGGCATCGGTTTCTAAGATA AATGGTTGTTTGAAGTTTGGCAGCCCAAGAACAGGTGTTGTTGTCATGGTTGCCTTGAGTGTTTTGAAGGTTGTGTCCGTGGCCTCAGTCCACACATAAC CATCTTTCTTGAGTAATTCAGTTAGAGGAGTAGCAATGTTGGCATATGCTTTGATAAAACGTCTATAGTAGCCTGTGAGACCCAAGAATCCTCGTAATTG ATGCACATTTGTTGGTGTTGGCCAATCAAGGATTGCTTGAATCTTGCTGTTAACCATAGAAACACCTTGTCCAGAAACAATGTGACCCAAATATTCAATT TCTAGGACACCAAATGAACACTTGGATAATTTTGCAAACAGCACATGTTGTTGAAGAACCTGTAGCACATTTTCCAAATGAGTCAAATGGTCATGCCAAG TAACACTATAAATGAGTATATCATCACAAAAAACAAGCACATATTTTCTTAAGGCCTCCTGAAAAACCTGATTCATCAAATTTTGAAAAGTTGCGGGAGC ATTGGTTAAGCCAAAAGGCATGACTAACTATTCATAGTGACCATGGTGGGTTCGAAAAGCCGTTTTATGCCTATCCTCTGGTTGCACCAAGATTTGATGA TACCCTGACCTTAAGTCGAGTTTTGAAAAAAATTGGGCACCATAAAGCTCATCCAATAATTCATCGACAGTTGGTATAGGAAAACTGTCCTTTATGGTGA CAGTATTTAAAGCTCGATAATCCGTGCAAAATCTCCAGCTACCATCTTTCTTTTTCACAAGTAGAATTGGGGAAGAGAAAGGACTGGTACTAGGTTGTAT GATACCTTGGTCTAGCATTTCATGCACCATCTTCTCGATTTGTTCTTTCTGGCTATGAGGATAGCGATATGGCTTGATTTTGACAGGCTTAGTACCTTCC AAGAGTGGAATAGCATGATTTTGGTTGCGAGGAGGTGGTAAAGATTGAGGAGTTTGAAAAACTGAACTGTATGTGTGCAATAACTGAGTAATCTCAGGAG CTAGATTCCGTGGTAGGTCTGTCATGGTATCATCTTCCGTATGTAGATGAAATAATAGAATTGTAAAAGATTTAGCTATAGCATCTGTGTGGGCTAGCCT TTTACAATGATGAAACTGTGTTTGCCTAGGTGTTGTGCTTCTTTCACCTTGTAATGTCACAAACTGCCCTTTGCAGAAAAATTTTAAAGTCAAAGCTGCA TAATCAGCCACATGTGGGCCTAATGTAGCCAGCCAAGAGGCCCCCAAAATGATATCTGCACCTGCCATAGGGAGTAACAACACTGGTAGTATCAATTCAT GTCCTTGTACTGTGAGTGACTATTGCGAAATCATGCCCTCTGCAGTCATAGTTTGGTATTTCCCACCAAAACTTTTAAACCCGGTCCTGGCTCCACTGGT AATTTGAGAAATTCAGCAATCCTTGGTTGAAGAAAATTGTCGGAACTTCCACCATCGACTAAGACCTGAGCACTAATGTTTCCAATCTGGCCTGTAAATC GCAGGATGCCTGTACCACTGGTCCCTTTCATGGCATTTAGGGACAGATGGTGGTCATTTGTGGTAGGGTCAGGGTCAAGTGAGGTGATATCTAGGTGGGG AAAGTTAAGATTGGGTGGGATATCATCTTCACAGTCATCAAATTGCAACATCATGACTTGGCGATTTTGGCACTTATGGGTTAGGGAAAATTTATCATCG CACCAATAGCATAGACCCTTTTCTCTTCTTAATTGCATTTCGGCTGGGGAAATTCGTTTAATGTTTGGGTTAGGTCTAGTTGGTGGGGTTGGAAGGAGAG GAGTGTGAGGTGTTTTTTGGTTAGTGGCTGTTTGATTTGAATTGAAGCTCTGTGGGTATATGAATTAGCATATGTGGCTTTATGTGGCTTAACGGATGAG GAATATTTTTCTTCATAAACTTTGGCAAGTGACACAGCTTTAACAATTGAAATGGGTGTGTGAATCATCACATCCCGGCGGATCTCTGGAATTAACCCAC TAATGAAACAATCTATGAGAGCATCATTACTCAAGCCATAAACTCTGTTAGCTAGAGAAGTAAATTGTAGATAATAATCAGCTACAGTCCCAGATTGGGT TAATTTGAATAGGGTTGCTCTTGGGCATTCATAGATCGATGGTCCAAAGTCCAATTCGAGGGCCCGTGTGAATTCTACCCAAGATTGGAAGGGTTGGGAA CGTTGCATCATCTGAAACCAAGGGACAACGTCCTTGTCTAAGTGCACTGAAGCTATGGTTAATCGATCCCTATCCAGTGTACCATAGTAATCAAAAAATT GTTCCGCACGAAAGATCCATTCTAACACGTCATTGCCATCAAAACGGGGAAATTCTAGTTTAATGTTTCTCACCTGAAAGGCTTGTTTGTGTGAGTGGTC GGCACCATGGGGAGATTTTTGGGAATTCTGATTCAGCAATAACTCAAGCGCATTGTTGATCTGCGAAAATTGGTTGTCGGTGTTCATCTGCATTGCTTCC AAACGTTCAAAACGAGTGGAGTTTGCAAGTTCCAATCGGTCCAGTTGCTGATGGAAATCACTGTATAATTTTTCAATTGCTTCAGCATTGCGCTTGACGT CAGAACTGAGCTCTTTCATCCTGGTATTTTCTGCCATGGTGAGATGAAAGCACCAATTGTAATGAAGCAAATAACGATAATGGATAATAGTACTTGGATA TATTGAATTATAGTCACTTCCAATATATGCTATAGAAGGAAAGTGAGAGTACAGTAGTGATGTTTAAAAAAAACAGAAGAGAGACTTGGAAGAGGAAAAG AAAGGAGATAATTCTCATTACATTCATATCCTTAAAACTACTCTTATTCATTATTATATACTAAATCAGGCAGACACATATTCCTTTAGCCTTGTGCTCG TCCCTTTTCTTGGCACCGTAATATCCGGATCTATTCTAACAACAATATTTCCTTCATGTGCATGTGGGTCCTTTGTAGTGGACCTGGCTGAGAACGTGCC TCTCCTATTTTCATTCTTTTCCACACCTTTGTTTGTATGTGTCTGTGGGTCCCTCATTACATATGACTTGGGTTTTTTGCGATTTTGGGCTTTGAACTTT TTAGATTATAATCTATACTTCTATTTCTTTTTTTTGCAGGAACCAAATTATGAGGATCCATTGAATCATGATGTTGCTGCTGTCTTGAGAGAT
• Tissue: pods
• Gene name: LI_gene_191385;
• Additional information: -

Expression of Ll_transcript_304740

FPKM

• PAB: 0.3
• PNAB: 0.4
• PS1: 0.5
• PS2: 1.1
• PS3: 0.8
• PW1: 0.7
• PW2: 1.1
• PW3: 1.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_304740

• Blastp: Retrovirus-related Pol polyprotein from transposon 297 from Sophophora with 44.67% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon 297 from Sophophora with 44.5% of identity
• Eggnog: -
• Kegg: -
• CantataDB: Link to cantataDB annotations (CNT0002914)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_014627597.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF00078.26)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;