Id Trinity | TRINITY_DN52269_c0_g1_i6 |
---|---|
Name Transcript | Ll_transcript_307291 |
Sequence | GAATTACCCAATACGACGTCGTATATTCCCACTTTCTGGCGACTGAAAATCTCAAATGATCTGAACGAAAATTTCATTCATCTGAGCTCATAAGAAGAAG AAGATGATGGATCCTTCTAGAACGCCACTGGGACAAATGCTATTGGACGAGATCATTCCTGTTCTAACGCTCCTTTCTACTCCCACCGTAGAGGATTCCT GCCTCAAAAACGGCCTCACTTTTCTTCAATTGCTATCTCCATTCTCCTCCTTCAACAACATCGACGTTCCTGTTAGAACCGCGAGTGATCAACCTTACCG CATTCACAACTTCAAATTGCGCTTATTTTACGCTTCCGATGTTAGAAGCCCCGATTTGAAGGAAGCTAAAGAGCATTTGAAACAAGTTATCACGGAAGCA GGGGAGAGAGTGTTCTCTGAGCTCACTTCAGATGAAGAAGAAATTGATCAACATCAACAACGTGCCAGTTTTGAATACAGAAATACACCATCATGGTTTC AACTTCTCAATAAAGAGCTTGTCCGCGTGGCTTCCTTTTCAGACCATGAAGCTTTTGACCATCCTGTGGCATGTCTTCTAGCTGTTTCTTCAAAAGATGA ACAGCCTATTAACAGATTTGTTGACCTTTTTAATACGAACAAGCTTCCTTCCCTTCTTAATGATGGTGCAATGGATCCAAATATTTTGAAGCATTACTTG TTAGTGCATGATAATCAAGATGGGTCTGTAGAAAGAGCAAGTAGAATATTGACAGAAATGAGGAGTGCATTTGGTACAAGTAACTGTTTGTTGCTTTGCA TTAATTCTTCATCGGATGCTCCAATCAAACATGAAGAAAATCCTTGGGCTTCATATATATCTGATGCCTCTCCTAGTCAAGATCACGGTTGCCTTCTTAA CATTGATGATATCAATGAGATCAAAGATCTAATGCAAAATTTATCATCTAAGCATATCATTCCAAACATGGAGCAAAAGATACGCGTGCTCAATCAACAG GTTTCTGCAACACGAAAAGGATTTAGAAACCAAATAAAAAACTTATGGTGGAGAAAAGGAAAAGAGGATGGTGCAGATTCTCCCAATGGTCCTATGTATA ACTATAACTCCACTGAATCCCAGATTAGAGTTTTGGGTGATTATGCTTTCATGCTACGAGATTATGAACTTGCCTTGTCAAATTATCGCCTAATTTCCAC AGATTACAAGATTGATAAAGCCTGGAAACGTTATGCTGGTGTACAGGAAATGATGGGACTTACATACTTCATGTCAGATCAATCAAGAAAGGAAGCTGAG TATTGCATGGAACATGCTTTTAACACATATTTAAAACTAGGATCCCTGGGTCAGCAAAATGCAACACGATGTGGTCTATGGTGGATAGAAATGTTGAAGG CACGAGATCAATATAAAGAGGCAGCTAGTGTTTATTTTCGTATTTGTGGTGAGGATATCTTACATTCTGCTGTGATGCTTGAACAAGCATCATACTGCTA CTTGCTATCTAAACCCTCCATGTTGCGCAAATATGGATTTCATCTAGTGCTCTCTGGTGAGCAGTATAAAAAGTGTGATCAGGTCAAACATGCAATTCGA ACATACAGAAGTGCTCTTTCTGTTTTTAAAGGAACTACTTGGAGTTATATTGGTGATCATGTTCATTTCCATATAGGACAGTGGTATGCTTCTCTTGGGA TGTATGATGTGGCTGTCAAGCATATGATGGAGATCTTGGCCTGTAGTCACCAGTCCAAGTCAACTCAGGAATTATTCCTGGGTGACTTTCTTCAAATTGT TGAGAAAGCAGGACAGACATTTGAGGTAACAAAGCTTCAATTGCCTGTGATCAACATCTCTTCGCTCAAGGTCATCTTTGAAGATTACCGGACTTTTGGA TCCCCTTCGTCTGCTAATACTAGTGAAGGCTTGTGGCGTTCTTTGGAGGAAGAAATGATTCAATCATTCTCTGCTGCCAAGACAAACTGGTTGGAATTGC AATCAAAGCTTGTCTCAAGGAAGCACAGTCAATCAAATGTTTGTGTTGCAGGGGAGGCTGTGAAGGTGAACATTGAATTCAAAAATCCTCTGCAAATCTC AATCCCCATATCTGGAGTTAGACTCATTTGCAAGCATTCCACTATTACTGATGAAGGTAGCCTAGATGAAAACAAGTCAAGTTTGGAGGATGATAACAGT GTTGATCACTTCAAGGATATGAATTCAGACAATTCCTCATTTTTGGTGTCTGATGTTGATTTCTTACTAGGAGGTGGTGAAACAACTCTGGTTCAACTAT CGGTTACTCCGAGGGTAGAAGGTACTCTTGAAATTCTTGGTGTTAGGTGGAAACTGTCAGGTACTATAGTTGGCTTTCACAAGTTTGAGTTTAGCCTCCC AAAGAATATTGTAAAAGCTAGAAGGAAAGGAAAGCGCTCACCTAATGACAAGTTTAAGTTTATGGTCATTAAGAGCATACCCAAACTTCAAGCTTCCATT AATTTGTTACCTGGAAAGGCATATGCTGGAGATTTACGGCAACTTGTTTTAGAGTTGAAGAACCCATCTGAGTTTCCTGTCAAGAATCTGAAGATGAAGG TAAGTGATCCTAGGTTCCTTATTATAGGGAATCAGGGAGATATGAAGTCAGAGTTTCCTGCTTGCTTAACAAAGAAGACAGATTCATCGGTACAAACTGA TGCACAAGCCAATAATAGTATCTTGTCTGACACAGTCTTTCTGTTTCCAGAGGGCACTTCAGTGCAAGGTGAAACACCTTTCTTGTGGCCTCTTTGGTTT AGGGCTGCTGTTCCAGGTGAAATTTCCCTTTACTTGAGCATATATTATGAGATGGAAGATATATCGAGTGTCATCAAATATCGCACCCTGCGCTTGCATT ACAACGTGCAGGTATTACCATCATTGGATGTCTCATTTCAAATTAGTCCTTCTCGATTGAGAATACAAGAATTCCTTGTTCGGTTGGATGTTGTTAACAA GACAAGCTCGGAATGTTTCCAAGTTTATCAATTGTCATCTATTGGGCAAAACTGGAAAGTCTCATTACTTCAACCCCCTGATACTATTTTTCCTTCACAA TCATTGATGGCTGGTCAAGCAGTATCGTGTTTCTTCACACTAAAGAAATCAAATACATTATCGACTTTTGAGGACAACATCTCTACCATGTCTGTCACAA GTGATGTAAGATTGGTTCCCCAAAGCAGTGAGGATTTAGTTTACAATGTAAACAGTGCACCTTTGGTCAATTTCCACCATTATGAAAGATTGCAGCAGGA ATTGTCACACGAGGTTGACTTAAATACTATTGATTTTGTATTGATCTCTCGACCACTCAAGAGTAACAATAATCTTGGTTTTTCTGATCCTCCTCATGTT ATGTCACATCATGCGAGTCACTCCAGGTGTGTTCCATTCCAAATATAACACATCTGATTTTGACTATGATAAATTTTATCAATTCATATGTATGTTATTT TACTACATTTTTTTGGGGGATCTATGTTAATATATTTGTTTCTTGATAGTACTGCTAGCACAGGCCCTATTTCATGGCTGCTAGATGGACCTCAAACCTT GCATCATGATTTCTCTGAATCTTTCTGTGAAATAGATCTGAAGATGCATCTTTACAATTCTTCCATTGCCACTGTTTTTGTGCGCATTGACACCTCAGAT CCTGTGGGTATTAGCGGACAGACTAACAGTTTTGATGCGGTTCAATCAGCAACGCCCGATAACCAAGCAGGGTGGCATGATGTCTCAACAGTGAATGAAC TTAAAGTCACCACATCAAATGTTCTTGAAACCCAACCAGGAAAGGCACTATCATTGGAAGGTGTTTCCCCTTACATTTGGTCTGGGTCAGGCTCTACCAA TCTCCACATTGAGCCTCTGTCCTCCGCGGAAATTCCTCTTCAGATATGTATGTTCTCTCCTGGGACATATGATCTATCAAATTACACTTTGAGTTGGAAC CTTCCATCCAAAGTTCCGGGAGATTCTAACGAAACGAAACAGTCTTCAGGCAAGTGCCAAGGATATAAATACTATCTCACTGTGCTCCAATCCGCTTGAG AAGCAGGTAATTGTTTTTGCTGTCCGTTTACAACTCGTGCTGCAATTTTAGATCTGATTTGTAACTGTGGGGTGTATATATGAAGTACTTTACTCCATGT ATTATTAAACAGCAATAGGAACAAGGTACCATGTAAAAGATTTCAGAGGGAAAATTGGTAGGAACACAAGTTATTTTTGTTCAAACAATAATGACAGTGA AAATATATTTGGACTGGCCTAATTTGAGAAAGGAAGTCAAGGGCAAGTATTTTTGTAAAGACAATCTTCCTGTAACATATACTATATGCCCCACAGTTGA TGGAATTTGAGTAGAGTAATCGAACCACAGTTCCTATACATTGGACTTGTGGGTGCTATCAGCACAAAAAAATGGTTATACCAATCTTTTGGGAAGATGA AGGAGCAATTCTTCTTTCTAGTTTTGATACATATGTTCAAAGAACTTCAGAGTGCTTTAGTTTTCAGACTGTTGCAGATTGTAAGACAAGGTTTATATGC TATGAAAAGTTGTTGAGAGTTTTATGGTACAATTTGATCAAGTACTCCTATGTATTTTGTTATTACAATAATGTATTTTTTTTTTAATTTTTGGAGTTAA TATTACAAGTTTATGGTAAGACTGGCA BLAST |
Tissue | pods |
Gene name | LI_gene_191387; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_307291
Blastp | Trafficking protein particle complex subunit 8 from Homo with 27.61% of identity |
---|---|
Blastx | Trafficking protein particle complex subunit 8 from Homo with 27.34% of identity |
Eggnog | trafficking protein particle complex(ENOG410XPCJ) |
Kegg | Link to kegg annotations (22878) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019455479.1) |
Pfam | ER-Golgi trafficking TRAPP I complex 85 kDa subunit (PF12739.6) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |