| Id Trinity | TRINITY_DN52271_c0_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_305622 |
| Sequence | TAAATACTCTCTCTTGTCTCGTATTACCCCTTTCTATTTTCTCTCTCTCTTTTCCCAAATCGGAAAAGAAAAAAGAAAACGATTACTCCATTTTTCTCTG TTAAACCCTAATCCCAAATCATCGATCCCAATTCGTTTCTCTCTCTATATATAAACTTCGATCCCTCACTTTCTCATCCCTCAATCGATTCAAAACCCTT TCCGCGAGATCCATTCTCACCATTTCTTTCCGATTTCGGATTCTGGTGAGTCAATGCTGGCGGTTATTCGGGTCAAGTAAATGGCGGATCCGCCAGGTTT CAACCACTTATCAACGCGTGTTCTTGTTTTTCAAGTTGAAGAAAACGAGGATTGTTGTTATTGTAGAGTTGAGTGAGAATGGTTAGTGTGCTGCGTGTGC ACCTGCCTTCTGAAATTCCCATTGTAGGATGCGAGCTCACACCTTATGTTCTGCTCCGTCGCGCCGATAAGACCATTACTACGGATGATGTTCATGAAAC TGCTCCCTTAGATGGGCAATTCTTGCGCTACAAGTGGTATCGTGTGCAGAGTGATAAAAAGGTTGCTGTCTGTAGCATACATCCATCTGAGCAGGCCACA TTGCAGTGCCTAGGTTGTGTTAAGGCCAGATTACCTGTTGCCAAAAGTTATCATTGCACACCAAAGTGTTTTTCAGATGCATGGCAGCATCACCGGGTCT TGCATGACCGTGCTGCAAGTGCAGCTAATGAAAATGGAAATGAGGATGAGGAGGTATTTGGGCGCTTTAATAGTTCTGGGTCTGGGGTAAGCAATTCCAG CTTGTCTGCATCTGCGTCAAGTGCTATCTTGGTGAATGGGTCTGAAGCACCTTATCCAGCAGCTATCACTCAAAAAAGTGGTGAAATTTGGTATGAAGTT GGACGTTGTAAGACTTACACTCCAACAGCTGATGATATTGGTCATGTCCTTAAGTTTGAGTGTGTTGTAGTTGATGCTGAGACAAAACTTCCAGTGGGGT ATGCTAACACTTTACTAACTTCTCGGGTCATTCCCGCTCCCTCGCCTAGCCCACGCCGCATGGTACCTGTTGACGGGATGGGGCAATTAGACGCAGATGG ACGCATAACATCTTCAGGAACTTTTACTGTCTTATCATACAACATATTGTCTGATGCATTTGCCTCAAATGATCTATACAATTACTGCCCTTCTTGGGCT CTCTCCTGGCCATACCGCAGGCAAAATCTGTTACAAGAAATCGTTGGTTACCGTGCGGATATTATCTGTCTTCAGGAGATTCAAAGTGACCACTATGAGG AATTTTTTTCCCCTGAATTGGACAAACATGGCTATTATGGTCTTTACAAGAGAAAAACAAATGAGGTATACAATGGCGACACAAATAAAATCGATGGTTG TGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGAATTCAATAAGGCTGCACAGTCATTAACAGATGCTATGATTGCACCC CCACAGCAAAAAACTGCCTTGAATAGGCTGGTTAAGGATAATGTTGCACTCATAGTGGTTCTAGAAGCAAAAGTTAACAACCAGCCTGTTGATAGTCCAG GGAAAAGACAGCTACTTTGTGTGGCAAACACACATGTAAATGTCCACCAGGATTTAAAGGATGTCAAACTCTGGCAGGTGCATACTCTCTTAAAAGGGTT GGAGAAAATAGCTGCAAGTGCAGACATTCCTATGTTGGTTTGTGGAGACTTTAATTCAGTTCCAGGAAGTGCACCTCATGAACTTCTTGCAATGGGGAAG GTAGATCCATCACATCCCGATTTAGCAGTTGATCCACTTAACATATTGCGGCCTCTCAACAGATTGGTTCACCAGTTGCCACTGGTTAGCGCATATTCAT CTTTTGCAAGAACTGTTGGTCTTGGACTTGAGCAGCATAAACGAAGACTGGACAGCACAACGAATGAGCCTTTATTCACGCATGTCACTAGAGATTTTAT CGGCTCTCTGGATTACTTATTTTATACAGCGGATTCATTGGTTGTGGAGTCATTACTCGAGTTATTGGATGAGGAGAGTTTAAGGAAAGATACAGCACTT CCTTCCCCTGAATGGTCCTCCGATCATATAGCTCTCTTAGCTGAGTTTCGCTGCTGCAAAAATAGATATAGGCGTTGACTCATAAGGTAACATCGTCTCT CCCCCTTTTATTGTGTGTTCCCAGCTTTGATATTTTTTGCTGAGCTAACACATTGTATAGAGCTTGAGTATTTATTTTTGGTATGTCTCCATGCTTTAAT TCTTGACCGGTTACGGCTCTCGATTTTTGCAGGTCAAATGCAGATACAGATAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_191403; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_305622
| Blastp | Carbon catabolite repressor protein 4 homolog 2 from Arabidopsis with 75.41% of identity |
|---|---|
| Blastx | Carbon catabolite repressor protein 4 homolog 2 from Arabidopsis with 74.19% of identity |
| Eggnog | Ccr4-NOT transcription complex, subunit(COG5239) |
| Kegg | Link to kegg annotations (AT3G58580) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019442961.1) |
| Pfam | zf-MYND-like zinc finger, mRNA-binding (PF15801.4) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |