Id Trinity | TRINITY_DN52271_c0_g1_i6 |
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Name Transcript | Ll_transcript_305624 |
Sequence | GAACAATCTTATTTCATATCATCGTACTTTGCCTACAAAAACCATAACGAAGTGAAATTTGTTGTTCCCCCCACTTCATCCTCTCTACTAAACTAAAACC CTAATAATCTTCTCTTCTCTTCATTCACCAATTCCCATTCCAATTTGAACCAAATAACACAGGATCCATTCCATGTTCTTTCTGATTTATGATTGAGTTA CACTGTTGTGACTCATTCACTCTTCAATTCACTACCTCACTTTTTCAAACAACACCATGTTAACCGTTCTACGTGTTCATCTTCCTTCTGATATTCCAGT TATTGGTTGTGAGCTCACTCCTTATGTCCTTCTTCGTCGTTCTGATAACAACTTTACCACTGATGATGTTCCTGAAACTGCTCCATTAGAAGGCCATTTT CTAATCTATAAGTGGTATCGTGTACAAAGTGATAAAAAGATTGCTATATGTAGTGTACATCCATCCGAGCTGGCCACACTACAGTGCATAGGTTGTGTTA AGGCCAAAATACCTGTTGCGAAAAGTTACCATTGCACTCCAAAGTGTTTTTCAGATGCATGGCATCATCATCGTGTCTTACATGATCGTGCTGCAAGTGC AGTCAATGAAAATGGAAATGAGGAGGAGGAGGTGTTTGGCAGATTTAATAATTCTGGGTCAAGTGCTAGTTTGACAAATGGGTCTGCTCCTACGTATCCA GCAGCTGTTACACAACGAAATGGTGGTGAAACTTGGTTTGAAGTTGGACGATCTAAGACATATACCCCAACAGCTGATGACATTGGTCATGTCCTTAAGT TTGAATGTGTTGTAGTTGATGCCGGGACAAAACTTCCAGTGGGGTATGCTAACACTTTACTAACTTCTCGGGTCATTCCCGCTCCCTCGCCTAGCCCACG CCGCATGGTACCTGTTGACGGGATGGGGCAATTAGACGCAGATGGACGCATAACATCTTCAGGAACTTTTACTGTCTTATCATACAACATATTGTCTGAT GCATTTGCCTCAAATGATCTATACAATTACTGCCCTTCTTGGGCTCTCTCCTGGCCATACCGCAGGCAAAATCTGTTACAAGAAATCGTTGGTTACCGTG CGGATATTATCTGTCTTCAGGAGATTCAAAGTGACCACTATGAGGAATTTTTTTCCCCTGAATTGGACAAACATGGCTATTATGGTCTTTACAAGAGAAA AACAAATGAGGTATACAATGGCGACACAAATAAAATCGATGGTTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAGAAATATGAGGTTGAA TTCAATAAGGCTGCACAGTCATTAACAGATGCTATGATTGCACCCCCACAGCAAAAAACTGCCTTGAATAGGCTGGTTAAGGATAATGTTGCACTCATAG TGGTTCTAGAAGCAAAAGTTAACAACCAGCCTGTTGATAGTCCAGGGAAAAGACAGCTACTTTGTGTGGCAAACACACATGT BLAST |
Tissue | pods |
Gene name | LI_gene_191403; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_305624
Blastp | Carbon catabolite repressor protein 4 homolog 1 from Arabidopsis with 73.33% of identity |
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Blastx | Carbon catabolite repressor protein 4 homolog 1 from Arabidopsis with 72.25% of identity |
Eggnog | Ccr4-NOT transcription complex, subunit(COG5239) |
Kegg | Link to kegg annotations (AT3G58560) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019444136.1) |
Pfam | zf-MYND-like zinc finger, mRNA-binding (PF15801.4) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |