Id Trinity | TRINITY_DN52271_c0_g1_i8 |
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Name Transcript | Ll_transcript_305627 |
Sequence | AGAATAAAAATAATTCGTTGATTGAAAAGAAAACATAACGCTCTATAAAAAAAAATTGATAGAAGGAAGAAAATGGCGTGATTTCTTGTTCTCACTCCAT TTTCTGTGATAACTTCCTAAAACCCTAATCTTCTCTTCGACCATTTCAATCCCTTTCTCTCTCACCAAATCTCCCTCCGATTAATCCAATTTTCGCTGAT TAGGGTTTCGTGAAAAGCCATTATTCAAGTTTTGAAGTTAATGGAGGATTCAATTTTCATATTCGATTCTCATTCTGGTGGTGGATGATTCTTTGATACA GTTACACTGATTCTTACTGAAAAAAGAGAAGAACATGCTGAGCGTGCTGCGTGTGCACCTTCCTTCTGATATTCCCATTGTAGGCTGTGAACTCACGCCT TACGTTCTCATTCGTCGCCCTGATAAGACTGTTACTACCGATGATCTTTCGCAAATTTCGCCGTTAGATGGACATTTTCTGCGATACAAGTGGTATCGTG TACAAAGTGATAAAAAGGTTGCTGTATGTAGTGTGCATCCATCTGAGCAGGCCACACTGCAGTGCATAGGTTGTGTTAAGGCCAAAATACCTGTTGCTAA AAGTTATCATTGCACTCCAAAGTGTTTTTCAGATGCATGGCAGCATCATCGTGTCTTACATGACCGTGCTGCAAGTGCAGTTAATGAAAATGGAAATGAG GAGGAGGAGGTATTTGGGAGATTTAATAATTCTGGGTCTGGATCATTGACCAGCTTATCTGCCTCTGCGTCCAGTGCTAGCTTGACAAATGGGTCTGCAC CTTTGTATCCAGCAGCTGTTACACAACGAAATGGTGGTGAAACTTGGTTTGAAGTTGGACGATCTAAGACATATACCCCAACAGCTGATGACATTGGTCA TGTCCTTAAGTTTGAATGTGTTGTAGTTGATGCCGGGACAAAACTTCCAGTGGGGTATGCTAACACTTTACTAACTTCTCGGGTCATTCCCGCTCCCTCG CCTAGCCCACGCCGCATGGTACCTGTTGACGGGATGGGGCAATTAGACGCAGATGGACGCATAACATCTTCAGGAACTTTTACTGTCTTATCATACAACA TATTGTCTGATGCATTTGCCTCAAATGATCTATACAATTACTGCCCTTCTTGGGCTCTCTCCTGGCCATACCGCAGGCAAAATCTGTTACAAGAAATCGT TGGTTACCGTGCGGATATTATCTGTCTTCAGGAGGTACATAAATGTGCTTTTCACTAGGATGAGAAACTTGATTTAATGACTGTGCTGATCTTCAACACT TTTTTTGGTTAAGAATTTTCTTTAGGCTGGTGTTGAATAAAAAAAATCTTTCAGTCACTGTCCTGAGATCATTTTTAATTTTCAATTGCAGTTGGTTTTA ATAAAAATGTGACCATGGACTTGGGGGCACAAAGCAATGCTGCCACCAGTCAATCTAATATTTGTTAACTTGAATTGCTACCAGTTGTAAATGATATAAT AAATTCTCATGTATTGCTTAAAAATGTTTCTTTCATTTCCATTCTTATGTCGGTGTTTTTATTGGGAGGGGGGACTTGTGAAGGTCAAGTTTACGGTACC TCCTGTCTATTGTGAGTTAGAATCTGTTTCCTTCTCCACTGCACTAACTCAGTCCCTCAGAAAGATATGATTTCCTCCTTTATTCAAATAACTTCTATTA ATCTAATGTGTATTCTGTTTCCCCTCAGATTCAAAGTGACCACTATGAGGAATTTTTTTCCCCTGAATTGGACAAACATGGCTATTATGGTCTTTACAAG AAAAAAACAAATGAGGTATACAATGGCAACCCCAATGCAATCGACGGTTGTGCAACATTTTTCCGCAGAGACAGATTTTCACATGTGAAGAAATATGAGG TTGAATTCAATAAGGCTGCACAGTCTTTAACAGATGCTATCATTCCACCCAATCTGCAGAAAACTGCCTTGAATCGGCTGGTTAAGGATAATGTTGCGCT AATACTGGTTCTAGAAGCCAAAGTTAACAATCAGCCTGTTGATAGTCCAGGGAAAAGACAGCTTCTATGTGTGGCAAATACACATATAAATGTCCCCCAG GATTTAAAGGATGTCAAACTCTGGCAGGTGCATACTCTCTTAAAAGGGTTGGAGAAAATAGCTGCAAGTGCAGACATTCCAATGCTGGTTTGTGGAGACT TTAATTCAGTTCCAGAAAGTGCACCTCATGCACTTCTTGCAATGGGGAAGGTAGATCCATCACATCCCGATTTAGCAGTTGATCCGCTTAACATATTGCA TCCTCTCAACAGATTGGCTCACCAATTGCCACTGGTCAGTGCATATTCATCTTTTGCAAGAACTGCTGGCCTCGGATTTGAGCAGCATAAACGGAGACTG GACAGTACAACGAACGAGCCTTTATTCACACACTTCACTAGAGATTTTATTGGCTCTCTAGATTACATATTTTATACAGCGGATTCATTGGTTGTGGAGT CATTACTGGAGTTACTGGATGAGGAGAGTTTAAGGAAAGACACAGCACTCCCTTCTCCCGAATGGTCCTCCGATCATATAGCTCTCTTAGCTGAGTTTCG CTGCTGCAAAAATAGATATAGGCGTTGACTCATAAGGTCAAATGCAGATACAGATAAACATAAAGGTTAAAAGAAGTTGTTGGTTGATTAGTTATTGTAA AATTGGTAGATCATGCCTTTGCCTTTTTTCCAGGTATCTCCATGTGGAGGTCCTTGCAATGATCTGCTATGTATTATTGCACCTTTTGTCTCATAGATAA GTTGAGTTATGCTTTACTGATTTGCCTCTGGCCCCAATCATTTTTATAAAATGGAAATTTTCTTAGTGTGTGTGCAAGCTACAAATTTTATAGATTTCAC CTTTTA BLAST |
Tissue | pods |
Gene name | LI_gene_191403; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_305627
Blastp | Carbon catabolite repressor protein 4 homolog 2 from Arabidopsis with 69.23% of identity |
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Blastx | Carbon catabolite repressor protein 4 homolog 2 from Arabidopsis with 78.48% of identity |
Eggnog | Ccr4-NOT transcription complex, subunit(COG5239) |
Kegg | Link to kegg annotations (AT3G58580) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019444135.1) |
Pfam | zf-MYND-like zinc finger, mRNA-binding (PF15801.4) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |