Id Trinity | TRINITY_DN52279_c2_g1_i13 |
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Name Transcript | Ll_transcript_305824 |
Sequence | TTATATCGGTCTTAGTAACTGTTGGTAGTGAAGTTGCTGAGAAGAAATTGATTGATCTTGGAGCAGTGCAAAGAATTATAGACTTGTTCTTTGAGTATCC ATACAATAACTTTCTGCATCACCATGTAGAAAATATTATTATGTCATGCTTGGAGAGCAAGAATTCTTTTCTTGTTGCGCACCTTCTCCATGATTGTGAT TTTGTTGGGAAAATTATTCAAGCAGAAAAGCATTTCACATTGGAAGCTGATGCAAACAAGCCAACAATACCTTCTGAGGGAAAGTCACCTCCTCGGATAG GAAGCATAGGACACTTAACCCGTATTTCTAACAAACTTGGCCAGTTAGGGAATAACAACAGTGTGATTCAGGAGCATTTGCAGGGAAACACTGAATGGAC AGATTGGTATGCAGATGTTCTATCAAAGCGAAACACTGTGGAAAATGTTTACCAATGGGCATGTGGGAGACCAACAGCGTTGCATGACAGAAATAGGGAT AGTGACGATGATGATTATCAAGATCGGGACTATGATGTTGCAGCCTTAGCAAATAACTTGAGTCAAGCCTTCCGTTATGGCATTTACAATAATGAAGACA TTGAAGAGGTACTTTCCTTTTTAAGCAGCACCTGGCAATCTGCATTTCATTGTTTCATTGTTTATAGGCCTTATCATAAAAGAGATACAGCTGGAGTTTC CATTGAAAGTTTATTTTATCAAACCTCAATTTAATTGATTATCGGTGCTGCCTGTATAATACCTTTAAGGTAGATTTTTTCAAAATGACCAGAAGTTATT AGAATGTAGTAACACATAAGATTATTGAAGTTTGCCTATGTGTTAATACACGGATGTCACCAGCTCACAGTTAATTATTATGCTTGGCTCCTACACTATT GTAGATGTTCTAGGCACAGCTTTATGTACCTGAACCAGATCAGATTCAGTCAGTTATGACAGTTTGCAGTTCTCTGAATTCCAAATCTCTCCTTTCTGTT CCTATTTTCCTTAACTCTTTCTCTCGTTTTATCAGATATCATGAACTCTGAAAGAAGTTTCTGGCAAAATGAATTGTGTTGGGGGTTTTATTGTGTCAAA AGGTTTAACTTAAATTGGAACGGCTCAGTCCTGGGTTCTCAAATCCTTTTTGTTAGGTAGTAAAGACAACTTATCCTATCAGAAAGCAGTTTGCATGTCA TATCTTCGCCATACTAAACAAATAAGCTCGGCATTATTCCCATCTAATGTAGGACTATCTTAACATCTACAGTTATAAAAGATCTCAGACTCGATAACTT CTGCTACTACTTTTTATGTCAAATTGCTCTGCAAAATTTGTCCAACAAATAGCCAGTTTGTGCTTTTTTACACATTTTACTTACAGATTTTGGTTACCAC TTTCTTAGTCATTGGGAATTACTATCCTTAGTTCATCAACATTTCGCAACTATAATTTATGTTATTATATAATACAAGATTTTGTCTGATGGATAACAAA TTTGTGATTTTTTTGCTCATTTTACTACAGGAGGTTAGTAACCATGTTCCTAGTGGTTAAATATTATTTTCGTCACCCCTTCATAATTTTTCTGTATTTC ATTATAGTAAGATAAATTTCTGATGGCTGATGCCAATTTTAGGTTTTGATCCCTCTTTGATAATGGACCTGCTTTATGTACTAATGATTTGTTGCTCTTG CTTGTCATGATTGTCATTTTATGGTTTTAGTCATTGGTTCTCAATTCCTGACCTGTGTATATTGTGTTTCAGGTTCATGGCTCCCTTGAACGAGATGATG AGGTAACATTTTATTTTCCTCTTAATGTGGAGTCCTGGGGGAAATGAATTTATAATTGAATGTGGCAAGTTAGTTCTTCGGCTAATTTTCTCCTGTAAAA AAAACTTGACTGAAATGGAAAGAGTAATCTGATTACATTCAATATTTGTCTCATTAGCATACTAGTATATCAACATGATTTAAGATAGAGTTTATGATAC CGTTTGATCCATATAGTCAACTCCACCTAGAGGGATGAAGACTTGGTTGTTGTTGTATTATATTAGTATCAGGAAGGTTTCACCTCACTAGTACATTATA GTTGCAATATGTGGCGTTAATGTGTGATTTGTCTACATATCACGTGACATCAGCTAAAGTCCACCTGTCCTTTCTAATGCTTAAATTTTTTTGGAGGGTT CTTGAATTGTTGTGATGCTTTTAATTACCTTATTCCCGTAGTAAACTCTTCTGGTTAAAAACCTCTTAAGAAATTCCTTTTATTGTAGTTTTCACTCATT GCTTGAATTAGTTAAGATATTCATAATGATAGTGGATATTCTAAATCAGAAAAGGGCTAAGAAGAAGAAAGTCCTAATTGAACTATTGTTCACGGAATTG AATAAATTAGGAAAGGAATGATATACTATATAATTAACCTTTTAATTTAGGAATGAAGGAAATTGAGTACATATCTGGTGTTCATGAGCACAGGAGCAAT TTGATATCAGGTTCCTAAGGATATTTTGCCTTTAGCAATTTCATCTGTATAATCAGTACAAATTTTGCAACAGGAACAACTTGTCTGCTTGATTCTTTTG AATGTGATATCACCAAGCGTTGTTTATGGGTTATGTGCAACCCTTCATTTCATTATTGATTAATAATAGATTTTCTTATATATTTGGTCTCGCACGAGCC CACATGAGCGTGTCTGATGTCGTAGCCCTGGCCACAATATGCTTTCAATGCCCCTTCTTAAACGTTTACCCACATGAAGTTCAGGTTGCCAACATGAGCC GCAGCCTGTGGTTAGACAGTGTTTTAATCCAACTAATCTGCAGTCGCAGCACATGATGTCTTTTCTTGTGTGATTTCTGTGCTTATCTTTATCATTGATT GTCATAATGAAGCATCTTATGTCTACATATTCTGCAGGATGTGTACTTCGATGATGAATCTGCAGAAGTTGTTATATCTTCTTTGCGGTTGGGAGATGAC CATGAAAGTGGCTCTCTTTTCACAAATTCCAACTGGTTTGATTTTGAGGATGATAGAAATGAAGTAGCCAATGAACGCTCAACTGGTTCAGTTGCTTCTC CATCACCCAATGCTGAGGAGGACGGTGCTATCATTGCAAGTGGAGATGATGATGTTGTTACTGGTGAAGATGGTGACTTAGCTGACACGGCATCATCTTC GCCTGAAGCAGAACCAAAATTAGAACAAAGTGGAACTGATATACCGGTTGAGTGGGTTGAATGGAGAGAATCTTCAGATGCCAATGACCCTTCTGATGTT TTGCTCAACAGAGAACTTGAGACAGAATCAGAGAAGAATAATCCCGATACAGATGAACCATCATCTCCATCACCCGTTGCATTAGCAAAGGATGAACAGG TTGCTGCCGAAATATTACCATCCTCCAGTATTGCATTAACAAAGGATGAAAAGATTGCTGCTGAGCCACTAGCATCATCTAGTGTTGCCTTAACAAAGAA GGAACAAGTTGCTGCTGAACCACCAGCATCTGTTAATGAGACCCCAACTATTGAAACCTCTGAGCCAACTCACACAGGAAATGAAAATCCAACTTCATTT ACACCCACTTCTGCGAATGAGGCAGTGGCTCAAGTTGGAGGAGATGACAGCAATGATACAACAGAGCTCAAAAAAGAAGTCGCAAATTAGTAGCTAATGT AAATTCCCGTGAATCCGCATCGGTAGCTATGCAACATATTAGCCAGGTGGGAAGATATATTCTAAGAATGGCTAGGCATAGTATTTAGTTCTGCAGCTGG TTTATTTTTATAGGAAAACTGATTTATTACTCCCACCTACTTCTGAAGCTTTTTTAATAAGGCTTTAGCACATGCCATTAGTAGCTACTGCCAAATTCTT CACCTGTCCATATCAATATTTACTAATCCAATTAGGTGTTTAACTGTTTATACAAATACATCTCTTCGTTCCAAGTGTTTAGGAATGGATGTTCATTCAT TATCCGATTGTTGAACAAACTCAGTTTTTTAGCATTGCAAAGCTTGATGGAGATGCTGATAGAGATTTGTACTTCAAAGGGCATGCTGGAAATGAGAGAA AATAAAAATGAAGGTGGATCTTTTGTAATTATAATTTGAGAGGAATAAGATTTGTTACAGATTCTGGAACTTGTATTGATTTCTTCAGGTATTGTATAAG TTTGTTTCCTAATCAACTTTAGAGCAGAGACTATCTATCTAGTACTACATGATTTAAGAAGTCTCATACATTGGCGTTTTTTGTGTTTGTTTTACTATTT GACGATATGTTAACATTAAACAGCTAAACTCAACGACCCTATAAACCAAAGAAAAGCATATAACACAAG BLAST |
Tissue | pods |
Gene name | LI_gene_191445; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_305824
Blastp | Serine/threonine-protein phosphatase 6 regulatory subunit 3 from Gallus with 27.52% of identity |
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Blastx | Serine/threonine-protein phosphatase 6 regulatory subunit 3 from Gallus with 29.38% of identity |
Eggnog | Protein phosphatase 6, regulatory subunit(ENOG410XRM1) |
Kegg | Link to kegg annotations (423116) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019440103.1) |
Pfam | SIT4 phosphatase-associated protein (PF04499.14) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |