Ll_transcript_306823

• Id Trinity: TRINITY_DN52283_c0_g1_i23
• Name Transcript: Ll_transcript_306823
• Sequence: TTTGAAATTATAGTTTGAAAGAAGAAGGTACTAGAAACTCAGTGCGAGGATGAGGAAGTGGACACTCCCTTCCATTCTTCTTCTACTCTCTCTCCTCCTT CTATTTTCAGATCAAGGTCAAAAACTGAAGGCAAATGCAGAGGCAAATTCTGAAGAGCTTGTAGATCCACCTAAGGTGGAGGACAAGATTGGTGCTGTTC CTCATGGTCTTTCCACTGATTCAGATGTGGCTAAGAGGGAAGCGGAGTCGATTTCGAAGAGATCGCTTCGGAGTAATGCGGAGAAGTTTGAGTTCCAAGC TGAGGTGTCGCGGCTTATGGACATTATCATCAACTCACTATACAGTAACAAAGATATTTTCCTGAGGGAGTTGATCTCTAATGCTTCTGATGCATTGGAC AAGATCAGGTTCCTCTCCCTCACAGATAAGGAGGTTTTGGGCGAAGGTGATAATGCCAAGCTTGAAATCCAGATTAAGTTAGACAAGGAAAAGAAAATTT TATCGATTCGAGATAGAGGTATCGGTATGACAAAGGAGGATTTAATTAAGAATCTTGGGACCATAGCAAAATCTGGAACTTCAGCATTTGTTGAGAAAAT GCAAACAAGTGGAGATCTCAATCTTATTGGGCAGTTCGGAGTTGGCTTCTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATTAGCAAGCATAAT GATGACAAACAGTATGTATGGGAATCAAAAGCTGATGGAGCATTTGCCATTTCAGAAGATACATGGAATGAGCCACTAGGGCGTGGAACTGAGATCAGAC TGCACCTTAAAGATGAGGCGGGAGAGTACTTGGAGGAGTCTAAGCTGAAAGAATTGGTGAAGAGATATTCTGAATTTATTAACTTCCCTATCTATATTTG GGCAAGCAAAGAGGTTGATGTGGAGGTCCCTGCTGATGAAGATGATTCTAGCAATGAAGACGAATCATCTGAAAGCAGATCCCCAGAGGAAGAAAGTGAG GAAGCTGCTGATGAAAGTGGAGATGAAGAAAAAAAGCCTAAGACGAAGACGGTGAAGGAAACAACTTATGAATGGGAACTTTTAAATGATGTGAAAGCTA TATGGCTGCGGAATCCAAAGGAGGTTACAGATGAAGAGTACACCAAATTTTACCACTCTCTTGCCAAGGATTTAAGTGATGATAAACCTTTAGCATGGAG TCACTTTATTGCTGAAGGTGATGTTGAGTTCAAGGCAGTCCTGTTTGTGCCACCCAAGGCTCCTCATGATTTATATGAGAGTTACTACAACTCAAACAAA TCCAACCTGAAGTTGTTTGTTAGACGAGTGTTTATTTCAGATGAATTTGATGAACTGTTGCCTAAATACCTCAACTTTTTGAAGGGCCTTGTAGATTCTG ACACATTACCACTTAATGTATCAAGAGAAATGCTTCAACAACACAGTAGTCTAAAAACAATCAAGAAGAAACTTATTAGGAAAGCCCTTGATATGATTCG TAGGATTGCCGAAGAAGATCCTGATGAGTCATCTGACAAAGAAAAGAAAGAAGAGGTGTCCTCTGACAATGATGAAAAGAGAGGTCAATATGCTAAGTTC TGGAATGAGTTTGGGAAGTCCATTAAACTTGGTATCATTGAGGATGCCACAAACAGAAATCGGTTGGCAAAACTACTCAGATTTGAGAGCACGAAGTCCG ATGGTAAATTGGTTTCTCTTGATCAGTACATATCTAGAATGAAAGCTGGACAGAAGGATATATTTTACATAACTGGAACCAACAAAGAACAGCTAGAAAA ATCTCCATTCCTTGAGCGGCTTAAGAAGAAAAATTTTGAGGTTATTTACTTCACTGATCCAGTTGATGAATACTTGATGCAATACCTGATGGATTATGAA GATAAAAAGTTCCAGAATGTGTCCAAGGAGGGTTTGAAACTTGGGAAGGGCGCAAAGGACAAGGAACTGAAGGAGTCCTTCAAGGATCTTACGAGGTGGT GGAAAAATACCCTTGCCAGTGAGAATGTTGATGATGTGAAGATATCCAACCGATTGGATAACACCCCTTGTGTGGTGGTGACATCAAAATTTGGTTGGAG TGCCAACATGGAAAGAATCATGCAGTCTCAAACTTTGTCAGATGCTAGCAAACAAGCATACATGCGGGGCAAGAGGGTTCTTGAGATCAATCCTAGGCAC CCTATAATCAAGGAGCTCCGTGAGAGAGTAGTAAAGAACCCTGAGGATGAGAGTGTGAAGCATACAGCAGAGCTGATGTACCAGACTGCACTCTTTGAAA GCGGCTTCCTACTTGACGATCCCAAGGATTTTGCTTCACGTGTTTATGATTCAGTGAAGTCTAGCTTAGACATCAGTCCCGATGCTGCAGTTGAAGAGGA AGATGACACCCAAGAAGTCGAGGCTGAAAGTGACACGAAAGAAGATGCATCTACTTCAAAGGCGGAAGCTGAAGCTGTGAATGATGAAAATAATGATGCC AAAGACGAGTTGTAGATTTTTCTGCTGCCTCTGTTTCTTGGTTTAGTTTTATGAAATAGATCGAAGAGCCCTCTAGAATGAGTATTGACTCCCTATGAAG TTGTTAAAGGAGCACGTTAGTCTTAACTTAATCACCGTCCAATGGAACTTTTGTTTGGTGAAACATTATCCAATGGAATTTCCCTTAGCATTATAGTAAA CTGTTAGAGAAAATCTACTTCTGTACTTCTTCATGTAACTCAGTAGGGTGTCCTTTATGTTTAATGTTCAGCCTTTTCCACCCTGTTAACAATTTTAATC CTGTAAGTGCAAAAATTGTTGAGTAAAAATGCTGTATCCAATCTCTGGCCGATCCTTAAGTAGTTTATGCTTAGAAAATGTTATCTTTTTCTGGTTGGAA TATAGGTCTAATAACATTTTGTAATCATAAAGGTTAGCCATTGAATTGAATTGGAATATTCTTAATGAAGGGCTGTACTAATGTTCACGGCTTCACGCTC AGTTTGAACCTGAGGTAGAACTTGAAGCATTCATAAGTCCTCTGGCTGCTACAATTGAGGTGAAGATCTGAGTCCAACTTTTCAGATTTGAGTCTAATGT ATCGACAAAAAATGTAAGTCATGCCATACTTTAATTATTGTGATTGTATATCATCAATTCAACGCTAACTATAAGTGCTCTTTAACTAAATAGATTCTAC
• Tissue: pods
• Gene name: LI_gene_191472;
• Additional information: details;

Expression of Ll_transcript_306823

FPKM

• PAB: 5.3
• PNAB: 35
• PS1: 69.1
• PS2: 49.1
• PS3: 37
• PW1: 43.9
• PW2: 23.1
• PW3: 14.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_306823

• Blastp: Endoplasmin homolog from Catharanthus with 84.79% of identity
• Blastx: Endoplasmin homolog from Catharanthus with 84.29% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019453253.1)
• Pfam: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (PF02518.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;