Ll_transcript_306313

• Id Trinity: TRINITY_DN52289_c1_g3_i1
• Name Transcript: Ll_transcript_306313
• Sequence: CTCTCTCTCTCTCTCTCTCTCTCTGCTTCTTCTATTTTTCCCTTTTACTCTATTTCAAGGCTCACTTCACTTCTTTGCAACCCATCACTCATCTCATGTA AAGATCGCAACTTTACATCTGGGTCGTCACAATTTCATTTGCTCTTTTCTTCTAGTCATTCCATATCTTCATCTCAAATATTGTTATTTTTTAATTCTCT TTTATATTATCCATTATCAAATTGGAATTCATTCTTATTTAATCATGCATTATTTCCTATTTATGGCTCATATTTCCATAACTGAAATCTCCGCATGTGT GATTTAGTTGTGAAGGAAAATGAGAAGAACTGCCTAAGCTTGTAAAAAAAGTGAAAATAATTGTAATAATTTGCGTGGAATTTTTTTAAAATTTTCGTCG CCATGGTTGATTCACAAATTGGAATTTTTTGTTAATAATGCATAGGAAGTTCTGAAAATTCAATTTATGGTTTTTCATTTTTGTATAACTGGAATCCTTT TCTTTTTCTAAGTGTGGTCTGTGAAGGGAAATGACAAGAACTGGCCAAGCTTGAAGGAAAAAAGTTGATCTTTTTGCTTTGAATTTGGCTGTGATGGAGT TCCCTACCGTTCCTCATTTGATGCGAGTCTGCACCCTTTTGCTGCTTCTATTACTATTGAAGAGTGATGTTGTATATTCCAATTCTGATTACTTGATCGG TCTTGGAAGCTATGATATAACGGGTCCTGCAGCTGATGTTAACATGATGGGTTATGCTAACACAGAACAAGTTGCATCTGGTGTTCACTTAAGGCTGCGG TCTCGGGCCTTCATTGTTGCTGAACCACATGGTAACCGGGTAGTTTTTGTGAATCTTGATGCTTGTATGGCTTCACAGCTTGTGACTATCAAAGTACTTG AGAGGCTCAAAGCAAGATATAGTGACCTGTATAATGAAAATAATGTAGCTATTAGTGGCATTCACACTCATGCTGGTCCTGGGGGTTATCTTCAGTATGT TGTGTATATTGTAACATCTCTTGGATTTGTGCGCCAGTCGTTTGACGCCCTTGTTGATGGCATTGAGAAAAGCATTGTCAAAGCCCATGAAAATCTCCGC CCAGGATCAATATTTGTCAATAAGGGAGATCTCTTAGATGCTGGTGTAAATCGAAGTCCTAGTGCTTATCTCAATAATCCTGCTGCAGAGAGAAGCAAAT ATATGTATAATGTTGATAAAGAAATGACTCTTTTAAAGTTTGTTGAAGATGAACGGGGTCCTGTGGGAAGCTTCAACTGGTTTGCTACTCACGGAACTTC AATGAGCCGTACAAACTCATTAATTAGTGGTGACAATAAAGGTGCTGCTGCACGACTTATGGAAGACTGGTTCGAGCGAAAAGATTCTGTAAAAATGAAC TCTGTTGGATTTGAAGATAATAGCATCCCCCGAAGAATTTCAAACATAATTCCCAGCCTCGGCAATAATCACCATGAATTATTGGAACTTGCTTCCTCAT TTCAATCTCCTCCTGGTAGGCCAACATCCAGAACTTCGAGTGTTGCTAGACGTGTGAGAGGTGATCTTAGTCAGGTTGACAAGCCTAGATTTGTATCTGC ATTTTGTCAATCTAATTGTGGTGATGTTAGTCCAAATGTACTTGGAGCTTTTTGTACAGACACTGGACTACCTTGTGACTTCAATCATAGTACATGTGGA GGGAAGAATGAATTATGCTATGGCCGTGGACCTGGTTACCCAGATGAATTTGAAAGTACACGTATTATAGGGGAGAGGCAATTTAGGAAAGCAGTGGATC TGTTCAATGGAGCATCTGAACAAATTAAAGGGAAGGTTGATTATCGACATACCTACATAGATTTCTCCAAGCATGAGGTAACTCTTTCCAAAGGAGGGGC TTCTGAGGTAGTCAAGACATGCCCTGCTGCAATGGGATTTGCATTTGCTGCTGGAACAACAGATGGGCCTGGAGCTTTTGATTTTAAGCAGGGTGATGAT AAGGGAAATCCTTTCTGGAACTTGGTCCGCAACGTACTTAAATCACCAAACAAGGAACAAATAGACTGTCAACAGCCTAAGCCCATTTTGCTTGATACTG GTGAAATGAAGTTACCATATGACTGGGCACCCTCAATCCTTCCAATCCAGATCCTCCGAGTTGGGCAGTTTGTTATTCTAAGTGTACCAGGAGAATTTAC AACAATGGCTGGAAGGCGTCTTCGTGATGCAGTGATGGCAGTGTTAAGCAGCAACAAAGATTTTGGCAGCAACGTTCATGTTGTCTTAGCAGGGTTGACT AATACTTATTCACAGTATGTGACAACATACGAAGAGTACCAGGTCCAAAGATATGAGGGTGCTTCCACACTGTATGGTCCACACACACTGAGTGCATACA TTCAAGAGTTCAAGAAGCTAGCAAAAGCTCTCATCAGTGACCAAAATGTAGAACCAGGTCCACAACCACCAGATCTCCTGAACCAGCAAATAAGCTTACT AACACCGGTTGTAGCGGATGGTACCCCTATCGGTGTAAACTTCGGAGATGTCATTGCTGACGTACCGAAGAACGCAACCTTCAAGAAAGGTGATAAGGTC ACTGTTACTTTCTGGTCTGGGTGCCCTCGTAATGACCTTATGACTGAAGGCACATTTGCCCTTGTGGAGTTCCTCAGAGGAAAGGATACTTGGGTTCCTG CTTATGATGACGATGATTTCTGTTTGCGATTTATATGGTCGAGGCCGTGGAAACTCAGTTTACGCAGTAAAGCCACCTTAGAATGGCGAATCCCACAGGA CGTAACTCCTGGTGTATACAGGTTAAAACATTTTGGTGCTGCAAAGAGCTTGTTAGAATCAATTCGTCATTTTACAGGGTCATCAAGTGCATTTGTAGTA ACATGATAAAGGGGCATTGTAGTTTATATTTTACAGTTTACAATTATCACTATACTTATGACTTGTTGGACTGAGCTTTAGCAGAATACACTAAATCAAG GATCATAACTGTGTTCTCTACTATTATCCATCACCTTTCCCTTGAGTATCATTCTATTATGAAAATCTGCATATGTAGGCACAACCGAACAAGATTAATG TAGACATGCTAATTGGTTGTACTCATAGGCATGTGCCTATGTAAGTTTTATGGACAACAACATCCAACCAAAGTTTATTTTCCTCCCCAAGTGAAACCTG TTACATTGGTTTGAGATATAGCTGAAAAAAGTGGATTATTTTATGAAAGAACTTTTGGGCCTATAAAAAGTGGGATTTGTGCTTATGAAAATTATCAAGT CATCAGGATAAGAAAATCTTGAAAGACGATAAACAATTTTATGAACAATGCAGAGTAGAATTTGTTGATTCTCGAATACGTAGGTATAAAATGGGCTATA TAAAACTGGCATGCCCCGTAACCCACGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAATCTCTGAAAGAATTAGAAGGTCT AGTATACTGCGATGTGTGATTTGATCAAAATTCTTATTTTATTGTACAGATTCCGAATGAGAAACTGTTATTCCAGTCAATTGAATTGGCATGCCCCGGA TCTGACATGTATGTCTCTTTGGCCGAGTAACATGAAGCTCAGAATTATGGGTATATTAAATACTCTAAAAAAAAAAAGGGGGGGGTTGGTCTATGGTCCA TTCAGTAATAGCTGTTACCTCGTGAAAAAAAAAAAGCCTTTTTTGAAATTTTATATTCCATTTCTTTTTTTTAGAAAGAACTTTATTTAAGTTTCAATAA GCAAATATATCATGGTTACAGAAGTTCTATCCATCGCATATAGGCTTAAGGACATCGTGGCATAACCATCGAGGTGAAGTCTGGACCTAAAAGATCGAAT CGAATGGAATGATACATAGACAAGGAAATCTCTTATGAATTCCAGGATATCCCTTTAATTGTAAATTAAGAAGGTTCCTCATTCGAGGGGGGTAGACTAC TCAAAAATTTTACATTTAATTTCTGTTGTAATTGAAAATCGGACAAATAATTCATAAAATCGAAATAAAAAAAGAATGCATCAATGAAATGTTGCTTGGT CTTTATTGTATTGAAAAATTGAGTAAAGAGTAAAATAAAACTTTTTTTTTAGATTAGAGTTTATAGAACTTGAAAGCGGAAACCCCTTATTTGGTGTAAC TACTTTAGCCGGATGAGAGGAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATTGGATAGGATCCTATCCAAATTTTTCGTTTGCTAGGCCCGTA GTTAAAAAACCCACTTTCTTACGATTACGAGGTTTATTTGAATATGAAATCCAATCCTGGAAATACAACATCCCGCTTTTTTTTACTACCCAAGGTTTCA ATATATTTCGAAATCGAGAAATTTCTAGTGGAGCGGGTGCTATCCGAGAACAATTAGCCGATCTAGATTTGAGAATTCTTATTGATTCTTCGTTGGTAGA ATGGAAAGGATTAGCGGAAGAGGGATCCGCGGACAATGAAAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGAATTTTTTAGTTCGGCGCATGGAA TTAGCTAAGCATTTTATCCGAACAAATATAGAACCAGAATGGATGGTTTTATGTCTCTTACCTGTTCTTCCTCCCGAATTGAGACCTATTATTCAAATAG ACGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACCCTTATTGATCTATTAACAACAAGTAGATCTAC GCCAGGGGAATTAGTCATGTGTCAGGAGAAATTGGTACAAGAAGCCGTAGATACAC
• Tissue: pods
• Gene name: LI_gene_191516;
• Additional information: details;

Expression of Ll_transcript_306313

FPKM

• PAB: 0
• PNAB: 0.7
• PS1: 1.3
• PS2: 0.6
• PS3: 0.8
• PW1: 0.7
• PW2: 0.8
• PW3: 0.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_306313

• Blastp: Neutral ceramidase 1 from Arabidopsis with 75.99% of identity
• Blastx: Neutral ceramidase 1 from Arabidopsis with 76.5% of identity
• Eggnog: Ceramidase(ENOG410XQWE)
• Kegg: -
• CantataDB: -
• Mirbase: bdi-MIR5056 (MI0017945)
• Ncbi protein: Link to NCBI protein (XP_019460497.1)
• Pfam: Neutral/alkaline non-lysosomal ceramidase, N-terminal (PF04734.12)
• Rfam: Intron_gpII (RF00029)
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;