Ll_transcript_306316

• Id Trinity: TRINITY_DN52289_c1_g3_i2
• Name Transcript: Ll_transcript_306316
• Sequence: CTTCTATTTCAGGGGTCAATCACTTACTTCTCTCTCTCTCTCTCTATATATATATATATATGTATATATATATGCAACCCATTACTCTTGTTTTTCTAAA GATCGCAACTTTACATCTGGGTGGTGTGATTTAGGAAGGGAAATGTGAAGAACTTGCTAAGTTTGAAAAAGAGTTGGTCTTTTTTTTTTGCTGTGAACTT TCTTATGATGGAGTTCCCTACCGTTCCTCATTTGACGCGAGTCTGCACCCTTCTGTTGCTTATACTACTAATGAAGAGTGATATTGCCGTATATTCCAAT TCTGATTACTTGATCGGTCTTGGAAGCTATGATATAACGGGTCCTGCAGCTGATGTTAACATGATGGGGTATGCTAACCCAGAACAAGTTGCATCTGGTG TTCACTTAAGGCTGCGGTCTCGCGCTTTCATTGTTGCCGAACCACATGGTGACCGCGTAGTGTTTGTGAATCTTGATGCTTGTATGGCTTCACAGCTTGT GACTATCAAAGTACTTGAGAGGCTCAAAGCAAGATATGGTGATCTGTATACTGAAAATAATGTAGCTATTAGTGGAGTTCACACTCATGCTGGTCCTGGG GGTTATCTTCAGTATGTTGTTTATATTGTAACGTCTCTTGGATTTGTGCGCCAGTCATTTGATGCCCTTGTTGATGGCATTGAGAAAAGCATTGTCAAAG CCCATGAAAATCTCCGCCCAGGATCAATATTTGTCAATAAGGGAGAGCTCTTAGATGCTGGTGTAAATCGAAGTCCTAGTGCTTATCTCAATAATCCTGC TGCAGAGAGAAGCAAATATAAATATAATGTTGATAAAGAAATGTCTCTTTTAAAATTTGTTGATGCTGAATGGGGTCCCATGGGAAGCTTCAATTGGTTT GCTACTCATGGGACTTCAATGAGTCGTACAAACTCATTAATTAGCGGGGACAACAAAGGTTCTGCTGCTCGATTTATGGAAGACTGGTTCGAGCGAAAAG GCTCTGTAAAAACAGATTCTGTTGGATTTGAAGATGATAGCATCCCTCGAAGAATTTCAAACATAATTCCCAGCCTTGGCGAAAATCACCACAAGCTATT GGAAATTGCTTCCTCATTCCAATCTCCTCCTGGTAGCCCAGCAACCAGAACTTTGAGTGTTGCTAGACGCGTGAGAGGTGCTGTTAGTCAGGTGGACAAG CCCAGATTTGTATCTGCATTTTGTCAATCTAATTGTGGTGATGTTAGTCCAAATGTACTTGGAGCTTTTTGTACAGACACTGGACTACCTTGTGACTTCA ATCATAGTACATGTGGAGGGAAGAATGAATTATGCTATGGCCGTGGACCTGGTTACCCAGATGAATTTGAAAGTACACGTATCATAGGGGAGAGGCAATT TAAGAAAGCAGTGGATCTATTCAATGGAGCTTCTGAACAGATTAAAGGGAAGGTTGAATTTCGACATACCTACATAGATTTCTCCAAGCTCGAGGTAACT CTTTCCAAAGGAGGGGCTTCTGAGGTAGTGAAAACATGCCCTGCTGCAATGGGATTCTCATTTGCTGCTGGAACAACAGATGGACCTGGTGCTTTTGATT TTAAGCAGGGTGATGATAAGGGAAATCCTTTCTGGAACTTGGTCCGCGACTTACTTAAAACGCCAAACAAGGAACAAATAGACTGTCAATGGCCGAAGCC CATTTTGCTTGATACTGGTGAAATGAAGCTACCATATGACTGGGCACCCTCAATCCTTCCAATCCAGATCCTCAGAGTTGGGCAGTTTGTTATTCTCTCT GTACCAGGAGAATTTACAACAATGGCTGGAAGGCGTCTTCGTGATGCAGTGATGGCAGTGTTAAGCAGCAACAAAGATTTTGGCAGCAACGTTCATGTTG TCTTAGCAGGGTTGACTAATACTTATTCACAGTATGTGACAACATACGAAGAGTACCAGGTCCAAAGATATGAGGGTGCTTCCACACTGTATGGTCCACA CACACTGAGTGCATACATTCAAGAGTTCAAGAAGCTAGCAAAAGCTCTCATCAGTGACCAAAATGTAGAACCAGGTCCACAACCACCAGATCTCCTGAAC CAGCAAATAAGCTTACTAACACCGGTTGTAGCGGATGGTACCCCTATCGGTGTAAACTTCGGAGATGTCATTGCTGACGTACCGAAGAACGCAACCTTCA AGAAAGGTGATAAGGTCACTGTTACTTTCTGGTCTGGGTGCCCTCGTAATGACCTTATGACTGAAGGCACATTTGCCCTTGTGGAGTTCCTCAGAGGAAA GGATACTTGGGTTCCTGCTTATGATGACGATGATTTCTGTTTGCGATTTATATGGTCGAGGCCGTGGAAACTCAGTTTACGCAGTAAAGCCACCTTAGAA TGGCGAATCCCACAGGACGTAACTCCTGGTGTATACAGGTTAAAACATTTTGGTGCTGCAAAGAGCTTGTTAGAATCAATTCGTCATTTTACAGGGTCAT CAAGTGCATTTGTAGTAACATGATAAAGGGGCATTGTAGTTTATATTTTACAGTTTACAATTATCACTATACTTATGACTTGTTGGACTGAGCTTTAGCA GAATACACTAAATCAAGGATCATAACTGTGTTCTCTACTATTATCCATCACCTTTCCCTTGAGTATCATTCTATTATGAAAATCTGCATATGTAGGCACA ACCGAACAAGATTAATGTAGACATGCTAATTGGTTGTACTCATAGGCATGTGCCTATGTAAGTTTTATGGACAACAACATCCAACCAAAGTTTATTTTCC TCCCCAAGTGAAACCTGTTACATTGGTTTGAGATATAGCTGAAAAAAGTGGATTATTTTATGAAAGAACTTTTGGGCCTATAAAAAGTGGGATTTGTGCT TATGAAAATTATCAAGTCATCAGGATAAGAAAATCTTGAAAGACGATAAACAATTTTATGAACAATGCAGAGTAGAATTTGTTGATTCTCGAATACGTAG GTATAAAATGGGCTATATAAAACTGGCATGCCCCGTAACCCACGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAATCTCTG AAAGAATTAGAAGGTCTAGTATACTGCGATGTGTGATTTGATCAAAATTCTTATTTTATTGTACAGATTCCGAATGAGAAACTGTTATTCCAGTCAATTG AATTGGCATGCCCCGGATCTGACATGTATGTCTCTTTGGCCGAGTAACATGAAGCTCAGAATTATGGGTATATTAAATACTCTAAAAAAAAAAAGGGGGG GGTTGGTCTATGGTCCATTCAGTAATAGCTGTTACCTCGTGAAAAAAAAAAAGCCTTTTTTGAAATTTTATATTCCATTTCTTTTTTTTAGAAAGAACTT TATTTAAGTTTCAATAAGCAAATATATCATGGTTACAGAAGTTCTATCCATCGCATATAGGCTTAAGGACATCGTGGCATAACCATCGAGGTGAAGTCTG GACCTAAAAGATCGAATCGAATGGAATGATACATAGACAAGGAAATCTCTTATGAATTCCAGGATATCCCTTTAATTGTAAATTAAGAAGGTTCCTCATT CGAGGGGGGTAGACTACTCAAAAATTTTACATTTAATTTCTGTTGTAATTGAAAATCGGACAAATAATTCATAAAATCGAAATAAAAAAAGAATGCATCA ATGAAATGTTGCTTGGTCTTTATTGTATTGAAAAATTGAGTAAAGAGTAAAATAAAACTTTTTTTTTAGATTAGAGTTTATAGAACTTGAAAGCGGAAAC CCCTTATTTGGTGTAACTACTTTAGCCGGATGAGAGGAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATTGGATAGGATCCTATCCAAATTTTT CGTTTGCTAGGCCCGTAGTTAAAAAACCCACTTTCTTACGATTACGAGGTTTATTTGAATATGAAATCCAATCCT
• Tissue: pods
• Gene name: LI_gene_191516;
• Additional information: details;

Expression of Ll_transcript_306316

FPKM

• PAB: 6.6
• PNAB: 13.2
• PS1: 15.3
• PS2: 17.6
• PS3: 22
• PW1: 7.8
• PW2: 6.7
• PW3: 6.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_306316

• Blastp: Neutral ceramidase 1 from Arabidopsis with 75.59% of identity
• Blastx: Neutral ceramidase 1 from Arabidopsis with 76.27% of identity
• Eggnog: Ceramidase(ENOG410XQWE)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019435719.1)
• Pfam: Neutral/alkaline non-lysosomal ceramidase, N-terminal (PF04734.12)
• Rfam: Intron_gpII (RF00029)
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;