Ll_transcript_486922

• Id Trinity: TRINITY_DN52310_c1_g3_i2
• Name Transcript: Ll_transcript_486922
• Sequence: GAGTTGGCATACTTTCTAGGCATTGAGTTCAAGAGGACTAAGCAGGGCATAGTGATGCACCAAAGCAAGTACATTGGTGATGTTTTAAAAAGGTTTCATA TGGCAGAATGCAATGCTGCACACACACCAGCAGAAACCAATCTTGCTAAAGCTCTAGTTGAGGAGGAGAAATCAGTAGAGAAGACACTCTATAGACAAAT GATAGGCACTTTGAGATACATATGCAACACAAGGCCTGATATTGCTCATGGAGTAGGAGTGGCAAGCAGGTACATGGAAAATCCATTCCATTCTCATGTA ATTGCTGTGAAGAGAATAATGAGGTATCTAAAGGGCACTCATGGTCTAGGAATCTGGTTTCCTGCCAAAAACAGCACCAACAGCATCAGTTGCAGACTTG AAATGGTTGGTTTTTCAGATGCAGATTGGTGTGGTGATAAAACAGATAGGAAGAGTACCACTGGATACTTGTTCAAGCTAGGAGGTGCACCTATTAGTTG GTGTTCTAAGAAGCAAGATGTAGTTGCTTTGTCTTCGTGTGAAAGTGAATACATTGCTGCTTCAATGTGTGCACGACAAGCAGCATGGATGAGCACTTTA ATGGAGGAAATTGGCTTAAAAGAAGAAGGAGAAGAGGTTCTGATGATGGTTGACAATAAGTCAGCCATTAACCTTGCTTTGAATCCAGTGGCTCATGGTA GGAGTAAACACATTGAAACAAGGTTTCACTACCTAAGAGATCAAGTGGAGAAGAGGAAGATCAAGCTTGAGTTTTGCAGCACTGATTTGCAGCAAGCAGA TTTGTTCACCAAAGCCTTGAAGAGGGACAGGTTTGTGAAGCTAAGGTGGATGATTGGCATGAGAAGTTTTGCTGCAGAGGCTGAAATTAGGGAGGAGTGT TAGAGATAGAGTGATTTAGCCTCTTTAGCATTAGATAGAGTTGTTAGGAAAGTTTCCTTTTATAGCTTGTGTAGTTAGTTAGTTGGTTGTTAAAAGTTAC TATATATAGTAACTAGTTTGATTGTGTAAGTGAGTTGTTAATTCATACATTTTCCATATAGCAAAAGGCATTCTTCATTCTCTATTCATTTTCTACTTCA TCTTTACTCTTCTTTTCTTTTCTTTCACTGTGACCAATCTGCCATTGATGCTGCACAAGTTTGGTGTGCATAAGTTTGCTAATTGAAGACGAGCAGGGGT GTAGTTGGTGCAAGGCTGGTTTGGTTTTAACAGTGGTATCTAGAGCTAGGTGCAACAAGGTTTCTGAGTGATTCTTGTGCAAGAAAGAAGTGGAAGAAGA AGAACCAGAAGGGTGCAAGGTAAATCAGTAAGGAAGAGAAACAAGATGACTAATGGCAATGGTTTCTCTATGACTTTACCAACTCTGGATTCCAAGAACT ATGATAGATGGAGGACTCAAATGAATACCATTTTTCGGTTTCAAGAAGTGAGTGAAATTGTGCAGAATGGATTCCAAGAACTAGGAGAAAATGCAAGTGA GGCACAAAGAACAATCTATAGGGAAGCAATGAAGAAGGATGGTAAAGCATTGTTCTTAATTCATCAATGTGTTGATGGAGCTAACTTTGACAAGATAGCA AGTGCCAAGACAGCAAAAGATGCATGGGACAGCTTGGAGAAAAGCCATGAAGGGGCTGAGAAAATCAAGAAAGTAAAGCTGCAAACATTGAGGAGGAAGT ATGAAATGCTTCAAATGGATGAGCATGAATCAGTTGCAACCTATCTTGGTAAGATTCTGTCCCTGACTAATCAAATGAAGACTTGTGGAAAAGTGTTCAA GGTGAAATCAGTGATTGAGAAGGTGTTGAGAACCTTAACTCCTAAGTATGATCACATAATTGTGGCCATAGAGGAGTCTAAGGATCTTGAGAATTACAAG CTGGAAGAGTTGCAAAGTTCTCTTGAGGCTCATGAGCAAAGGCTGAAGGAGAGGCTTGGAGAAAGCAATGATGATCAAGCCTTGCAGGCTTATCAGACCA AGAAAGGTTCTGGTCAGTGGAGCAAGAACAAGAAGGGCAATCTGAAGTGTAGGAATTGTCAAGGTTCCAGAGGTGATGAAGCTTCAACCTCAGCATCTCA GAGGCATCTCAATAGCACAACCAATCCTTCTTGTTATAGGAAGAACTCTAACAAGAATTCTGTAACAAGAAAGAAAGGTGATAAAAGCAAAGTGCAGTGT TACAATTGCAGAAAATATGGACACTTTGCAGCTGAGTGCAATGAGAAAAGAAGCATAAGTTCCAGAGATGAAGAGGTGAAACTTGCACAAGGGAATGAGT CTGATGATGAAGGGCACTACCTATTAATGGCAACAATTAAGAACAAAGCTGAAGAGACTGATGTATGGTATTTGGACACTGGTTGTTCAAACCATATGAC AGGAAAGAAAGACTGGTTTACCAGCCTAGATGAATCAACCAAAAGCAAAATCAAGTTTGCTGATAATAGTGCAGTGACAGCAGAGGGAATTGGTAAAATC ATGATTCAAAGAAAGGATGGAAAGAAAGCCTTCATATCCAATGTGCTCTATGTGCCAAAGATGAAGAGCAACCTAATCAGTCTAGGCCAACTTCTTGAAA AAGGCTACTCAATGGAAATGAAGGAAGGACTGCTCAAAGTATTTGATCAAGATAAGAATAATATCTTGAAAGCTCCATTATCTACAAATAGAACTTTCAA GATAGGTATTCAAGCAAGTGATCAAAACTGTTTTCTGTCAACAAGTGAGACAGACTCTTGGCTATGGCATCAAAGGTTTGGGCATCTCAATTTCAAGAGC TTGAACCAATTGAGCAGAGAAAGCATGGTACTTGGCTTACCTCAGATCAAAACACCAGATCAGATGTGTGAAGATTGCATTTCAGGTAAGCAGACCAGAA ATTCTTTTGTATCTTCAATACCAAGTAAGACTGTGCAGGCATTAGAATTGGTGCATACTGATGTGTGTGGCCCATTGGAGACAAACACAATTGGAGAGAA CAGATACTTTGTTACATTTCTGGATGATCACACCAGAAAACTCTGGATCTACTTGATGAAGAACAAGAGTGAGGTGTTTGAAATTTTCAGAAGATTCAAG GCTCAAGCAGAGAATCAAAGTGATACAAAGTTGAAGAGATTGAGGTCAGATGGTGGAGGGGAATATGTGTCTGCAAAACTTCATGAGTTATGTACAAAAG AAGGCATAATTCATGAAGTTATTGCACCTTACACACCTCAACACAATGGTGCTGCAGAGAGAGCAAACAGAACCATCCTCAATATGGCCAGATGCATGCT GAAAACCAAGAGTCTGCCCAAGAAGTTTTGGGGAGAAGCAGTCTCTACTGCAGTTCACATCATCAATAGAAGTCCAACCAAGAGACTTGATGGCAAGACA CCTGAGGAAGCTTGGAGTGGACTCAAGCCAAGTGTGAGTCATTTTAGAGTCTTTGGTTGCATCTGCTTCAGACATGTGCCTGAAGTCAGTAGAAAGAAGC TAGATGAAAGAGGGGAAAAACTGATTTTCTTGGGCTACCACTCTACTGGTTCCTACAAGGTATTTGATCCAAAGAATAACAAAGTCTTGATGAGCAGAGA CCTGAAGTTTGATGAAACTCAGAGTTGGAATTGGAATGCACATACTGAGGAGAGCAAAGACACTCATTTGCAACTTGATGAATGCAATGAAGAACCTGAG GTAACTCAGCCTTCAGTTACAACTTCAAGCAGTCAGCACACATCACATAGGCTTAGACAGCCACCTAGAAGATTCAATGACTATGAGGTGTTTCATGACT CAAACATCTCTGAGGATGGTGATCTAGTGCATATGGCTCTATTGGCTGAGATGGAACCAGTAAGTGTAGATGAAGCCTTAAAGCAACCAAACTGGATTGA GGCAATGAGGGAAGAACTCAACTCAATTAACAAGAACAACACTTGGAGTTTAGTTGAGTTACCTAGAGGAAAAAGAGCTATCAAAGTCAAATGGATCTAC AAAACTAAAGTGAATCCAGAAGGGGCTGTGATCAAGTTCAAGGCAAGATTGGTTGCCAAAGGCTTCTTACAAAAGGAAGGGCTAGACTATGATGAAGTCT TTGCACCAGTAGCAAGACTAGAAACAGTAAGGCTAGTAGTTGCAATGGCAAGCTATAACAGTTGGGAAATCCATCAAATGGATGTGAAGTCTGCATTTTT GAATGGTCCTCTTGACAAGGATGTATTTGTGACTCAACCACCAGGTTTTATAGCTCAAGGCAGAGAAGAACTTGTTTACAAACTACACAAGGCATTGTAT GGTTTGAAACAAGCTCCAAGAGCATGGAATAGGAGAATTGACACTTTCTTGAAGCAAGTTGGCTTCCTAAAGTGCTCTTCTGAACATGGAGTCTATGTGA AGAACAAGTGCAGGGCAGAACCACTCATTGTTTGCCTATATGTGGATGACTTACTAATCACTTGCTCAAACTCATCTGAAATTGCAGTGTTCAAACAACA AATGAGATCTGAGTTTGAGATGACTGATCTAGGTGAGTTGGCATACTTTCTAGGCATTGAGTTCAAGAGGACTAAGCAGGGCATAGTGATGCACCAAAGC AAGTACATTGGTGATGTTTTAAAAAGGTTTCATATGGCAGAATGCAATGCTGCACACACACCAGCAGAAACCAATCTTGCTAAAGCTCTAATTGAGGAGG AGAAATCAGTAGAG
• Tissue: pods
• Gene name: LI_gene_191661;
• Additional information: details;

Expression of Ll_transcript_486922

FPKM

• PAB: 0.1
• PNAB: 0.7
• PS1: 0.2
• PS2: 1.3
• PS3: 0.4
• PW1: 1.6
• PW2: 4
• PW3: 10.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_486922

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.06% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.12% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020987654.1)
• Pfam: gag-polypeptide of LTR copia-type (PF14223.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;