Ll_transcript_487572

• Id Trinity: TRINITY_DN52318_c1_g1_i13
• Name Transcript: Ll_transcript_487572
• Sequence: AAGCAAGATCACTCGGGTGAGCAGTTAGCGAATACTAATGTCTCGCCGGCATCTGGAATGGAGCAAAGTAATGGAAGAACAAGCATAGGGAATGCATCAG GTCCTGCTGCTACTCCATCTAGAACCGGTAATGTTTCTGTCGAGGGAGGACATGATTTACCTTCAGAGGTTGGTGATTGTACAAGACATGGTACATCCAC AAATGGGGCCGTCACTGAAGGCATCGGAGTTAATAGACACAAAGAAGTATCAGTTCAACATTTTAAAGGTGACAGAGAAGAGGGTGAGTTATCTCCAAAT GTTGACTTTGAAGAGGATAACTTCAGAGTTTATGGAGATGGTAGCTCGGACGTACTGCATAAAGCAAAGAATGGTGGTTTGAGTCAGCAATACCAAAATA GACACAGGGAAGAAGCTTTTGGTGAAGCCAAAGGAGAAAATTATGCCAATGCTGATGATGAAGGTGAGGAAAGTCGTCACAGGTCATCGGGGGATATTGG AAATGCTTCTGTAAATGATGTTTCTGGAAGTGAGTCTGCTGGAGGCGAGGACTGTTCTCGAGAGGATCATGAGGATGGGGAACACGATAACAAGGCTGAG AGTGAAGGTGAAGCTGAAGGAATGGGCGATGCCCATGATGTTGAAGGGGATGGAACCTCATTGCCACTTTCAGAACACTTCCTTCTAACCGTAAAGCCTC TGGCTAAGCATGTACCGCCGGTGTTGCACGTGAAAGAATGGAATTCTCAAGTTTTTTATGGAACTGATTCCTTTTATGTTCTGTTTAGACTTCATCAGAC GTTGTATGAGAGGATACGATCAGCAAAGATTAACTCATCATCTGCTGAAAGAAAATGGGGGGCTTCAAATGATACAAACTCTCGTGATCAATATGACAGG TGATATGCCTTGGAAATGTTGCATTGTATTATAAATTTCAAGATAAATGTGAATATATGCAAGATGAGGTCACCTTAATACTACAGGTTCATGAATGCCC TTTACAATCTATTGGATGGTTCTTCTGATAATGCTAAATTTGAGGACGAATGTCGAGCTATCATTGGAACTCAATCATATCTCTTATTCACATTAGACAA GCTGATATATAAACTTGTTAAGCAGCTTCAAGCTGTTGCCACTGATGAGATGGATAATAAGCTGCTTCAACTATATGCATATGAGAAATCAAGAAAACCT GGAAGATTTTTTGATGTTGTTTATCATGACAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATATTCACCTGGACCAATGCAAATGT CTATTCAACTGATGGACCATGGACATGATAAGCCGGAAGTAACTGCTGTGTCTGTGGACCCAAATTTTTCAGCCTATTTGCACAATAACTTCCTCTCTGT TGTTCCGGACAATAAGGAGAAGTCGGGAATTTTTTTGAAGAGGAATAAACGTAGATATGCCCACGATGATGAATTTTCAAGCCAGGTTATGGAAGAACTA AAAGTTGTGAATGGTCTGGAGTGCAAGATAGCTTGCAGTTCATCTAAGGTTTCATATGTATTAGATACCGAAGACTTTTTGGTTCGGATGAGAAGGAAAA GAAGAGCCTTGCATCCGAAGAGTTCATGCCATGAACAAGCAAAGTCTTCAAGCATTTTTTCAAGAAGGGTACAACGGCTCCGCAGATTGTTTTCTAGCCA ATGACTGTCCATTTTGAGCTGGAGATGTTTTTTTCAAGCCTCATTAGATTGGTGCCAATGAGAACACTGTTAAAGGAGTTGAGCAAAAGATGGTGCTGTT TCTCTGAAATTATTTGTTCATACTTTCTATACCAGCAATCTAATAATAGCTCACAGAAAGGGTGGAACGGAGCAGAGACTAGATTATCTGATACTGTGAC TTGATGGCTGATGGGTTCAGAGTAATGTAAATATAGGTACTTTGTCATGTGATGTAACTACGGTACATTTTTATTCCATTCATCCATACTCCATAGTTTT GTTATCTTATATTTGTTTTCTTTCCTTTAACTTCTAAAACAACTTTTTCGACGTTATTGATATTGGAACATTCGTTGCTGCAATTTGCCCGTGGCCTTAA AATATTTGCATTCTGATATTTAGATTCCACACCCACATCCCGGAAAATAAAATAAAGTGTCATATCTCACATCTCATTAGAAATGGTGGCTGAG
• Tissue: pods
• Gene name: LI_gene_191727;
• Additional information: details;

Expression of Ll_transcript_487572

FPKM

• PAB: 0
• PNAB: 0.8
• PS1: 0.8
• PS2: 0
• PS3: 0.4
• PW1: 0.9
• PW2: 0.9
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_487572

• Blastp: Paired amphipathic helix protein Sin3-like 3 from Arabidopsis with 45.95% of identity
• Blastx: Paired amphipathic helix protein Sin3-like 4 from Arabidopsis with 51.64% of identity
• Eggnog: Paired AMPhipathic helix protein(COG5602)
• Kegg: Link to kegg annotations (AT1G24190)
• CantataDB: Link to cantataDB annotations (CNT0002810)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445513.1)
• Pfam: C-terminal domain of Sin3a protein (PF16879.4)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;