| Id Trinity | TRINITY_DN52318_c1_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_487557 |
| Sequence | AAGCAAGATCACTCGGGTGAGCAGTTAGCGAATACTAATGTCTCGCCGGCATCTGGAATGGAGCAAAGTAATGGAAGAACAAGCATAGGGAATGCATCAG GTCCTGCTGCTACTCCATCTAGAACCGGTAATGTTTCTGTCGAGGGAGGACATGATTTACCTTCAGAGGTTGGTGATTGTACAAGACATGGTACATCCAC AAATGGGGCCGTCACTGAAGGCATCGGAGTTAATAGACACAAAGAAGTATCAGTTCAACATTTTAAAGGTGACAGAGAAGAGGGTGAGTTATCTCCAAAT GTTGACTTTGAAGAGGATAACTTCAGAGTTTATGGAGATGGTAGCTCGGACGTACTGCATAAAGCAAAGAATGGTGGTTTGAGTCAGCAATACCAAAATA GACACAGGGAAGAAGCTTTTGGTGAAGCCAAAGGAGAAAATTATGCCAATGCTGATGATGAAGGTGAGGAAAGTCGTCACAGGTCATCGGGGGATATTGG AAATGCTTCTGTAAATGATGTTTCTGGAAGTGAGTCTGCTGGAGGCGAGGACTGTTCTCGAGAGGATCATGAGGATGGGGAACACGATAACAAGGCTGAG AGTGAAGGTGAAGCTGAAGGAATGGGCGATGCCCATGATGTTGAAGGGGATGGAACCTCATTGCCACTTTCAGAACACTTCCTTCTAACCGTAAAGCCTC TGGCTAAGCATGTACCGCCGGTGTTGCACGTGAAAGAATGGAATTCTCAAGTTTTTTATGGAACTGATTCCTTTTATGTTCTGTTTAGACTTCATCAGAC GTTGTATGAGAGGATACGATCAGCAAAGATTAACTCATCATCTGCTGAAAGAAAATGGGGGGCTTCAAATGATACAAACTCTCGTGATCAATATGACAGG TTCATGAATGCCCTTTACAATCTATTGGATGGTTCTTCTGATAATGCTAAATTTGAGGACGAATGTCGAGCTATCATTGGAACTCAATCATATCTCTTAT TCACATTAGACAAGCTGATATATAAACTTGTTAAGCAGCTTCAAGCTGTTGCCACTGATGAGATGGATAATAAGCTGCTTCAACTATATGCATATGAGAA ATCAAGAAAACCTGGAAGATTTTTTGATGTTGTTTATCATGACAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATATTCACCTGGA CCAATGCAAATGTCTATTCAACTGATGGACCATGGACATGATAAGCCGGAAGTAACTGCTGTGTCTGTGGACCCAAATTTTTCAGCCTATTTGCACAATA ACTTCCTCTCTGTTGTTCCGGACAATAAGGAGAAGTCGGGAATTTTTTTGAAGAGGAATAAACGTAGATATGCCCACGATGATGAATTTTCAAGCCAGGT TATGGAAGAACTAAAAGTTGTGAATGGTCTGGAGTGCAAGATAGCTTGCAGTTCATCTAAGGTTTCATATGTATTAGATACCGAAGACTTTTTGGTTCGG ATGAGAAGGAAAAGAAGAGCCTTGCATCCGAAGAGTTCATGCCATGAACAAGCAAAGTCTTCAAGCATTTTTTCAAGAAGGGTACAACGGCTCCGCAGAT TGTTTTCTAGCCAATGACTGTCCATTTTGAGCTGGAGATGGTATGCAAAAACTTCTAGTAGAAGGCTAAACTTTTTATTTTAGACTTGACGCCATACTTA CTTTCAACATATGATGAGGGCATGGTTTCTTCAAAAGATCAATTGTTATTGGTTTTCTCTTACTACTATATCAACACTAAATAAATACTCAACTAAAATT TCTGTCCTTGGGTTTTTGTTCGAGTTAATAATAATTATTGGCAAACTCATCTAGTTAATAACTGCTATATGGTTTTCCTTGTGTAGTTTTTTTCAAGCCT CATTAGATTGGTGCCAATGAGAACACTGTTAAAGGAGTTGAGCAAAAGATGGTGCTGTTTCTCTGAAATTATTTGTTCATACTTTCTATACCAGCAATCT AATAATAGCTCACAGAAAGGGTGGAACGGAGCAGAGACTAGATTATCTGATACTGTGACTTGATGGCTGATGGGTTCAGAGTAATGTAAATATAGGTACT TTGTCATGTGATGTAACTACGGTACATTTTTATTCCATTCATCCATACTCCATAGTTTTGTTATCTTATATTTGTTTTCTTTCCTTTAACTTCTAAAACA ACTTTTTCGACGTTATTGATATTGGAACATTCGTTGCTGCAATTTGCCCGTGGCCTTAAAATATTTGCATTCTGATATTTAGATTCCACACCCACATCCC GGAAAATAAAATAAAGTGTCATATCTCACATCTCATTAGAAATGGTGGCTGAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_191727; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_487557
| Blastp | Paired amphipathic helix protein Sin3-like 4 from Arabidopsis with 53.23% of identity |
|---|---|
| Blastx | Paired amphipathic helix protein Sin3-like 3 from Arabidopsis with 54.17% of identity |
| Eggnog | Paired AMPhipathic helix protein(COG5602) |
| Kegg | Link to kegg annotations (AT1G70060) |
| CantataDB | Link to cantataDB annotations (CNT0002810) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445511.1) |
| Pfam | C-terminal domain of Sin3a protein (PF16879.4) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |